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[182770_at]

Description D2096.5 /REP_DB=WormBase Gene ID /WP=CE04303 /TR=Q19002 /GB=AAA81489.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 18.2
(-1.1)
A 		1.8
(-3)
A 		2.9
(-2.9)
A 		53.1
(3)
A 		51
B 3.8
(-3)
A 		6.9
(-1.7)
A 		3.9
(-3)
A 		17.6
(3)
A 		14
C 13.9
(-3)
A 		29.8
(0.5)
A 		15.1
(-2.7)
A 		41
(3)
A 		27
avr 12
(-2.1) 		12.8
(-1.9) 		7.3
(-3) 		37.2
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 8.6
(-2.2)
A 		3.4
(-3)
A 		35.6
(2)
A 		37.4
(2.2)
P 		31.7
(1.4)
A 		42.3
(3)
A 		39
B 30.4
(3)
A 		27.9
(2.3)
A 		8.1
(-3)
A 		10
(-2.5)
A 		15.1
(-1.1)
A 		20.8
(0.4)
A 		22
C 30.7
(1.7)
A 		38.2
(3)
A 		23.3
(0.4)
A 		7.1
(-2.4)
A 		3.6
(-3)
A 		26
(0.9)
A 		35
avr 23.2
(-0) 		23.2
(-0) 		22.3
(-0.4) 		18.2
(-2.3) 		16.8
(-3) 		29.7
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.6
(2)
A 		0.4
(-3)
A 		0.8
(-2.7)
A 		7.8
(3)
A 		7
B 1.2
(-2.4)
A 		1.7
(-1.3)
A 		0.9
(-3)
A 		3.7
(3)
A 		3
C 4.6
(-3)
A 		8.6
(3)
A 		5.3
(-2)
A 		6.9
(0.5)
A 		4
avr 4.1
(-0.2) 		3.6
(-0.9) 		2.3
(-3) 		6.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.6
(-2.7)
A 		1.2
(-3)
A 		7.8
(1.4)
A 		9.5
(2.5)
P 		9.6
(2.5)
A 		10.3
(3)
A 		9
B 10.6
(3)
A 		9.3
(2.1)
A 		2
(-3)
A 		2.6
(-2.6)
A 		6.1
(-0.1)
A 		7.8
(1)
A 		9
C 11.4
(2.8)
A 		11.7
(3)
A 		5.9
(-0.3)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		8.7
(1.3)
A 		11
avr 7.9
(1.6) 		7.4
(1) 		5.2
(-2) 		4.5
(-3) 		5.6
(-1.5) 		8.9
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9896
Sequence Type Exemplar sequence
Representative Public ID D2096.5 NCBI
Target Description D2096.5 /REP_DB=WormBase Gene ID /WP=CE04303 /TR=Q19002 /GB=AAA81489.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069016(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069016 NCBI Caenorhabditis elegans D2096.5 (D2096.5) mRNA, complete cds. 10/11 None
SNAP00000025667 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8359147:8359698:-1 10/11 None
GENEFINDER00000025694 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8357968:8359698:-1 10/11 None
D2096.5 ENSEMBL cdna:known chromosome:CEL140:IV:8359147:8359698:-1 gene:D2096.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8359152-8359704(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2096.5
Entrez Gene 183966 Entrez gene
SwissProt Q19002 EMBL-EBI
WormBase CE35265 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501417 D2096.5 [Caenorhabditis elegans] gb|AAA81489.2| Hypothetical protein D2096.5 [Caenorhabditis elegans] 2.0E-66
blast NP_501417 D2096.5 [Caenorhabditis elegans] gb|AAA81489.2| Hypothetical protein D2096.5 [Caenorhabditis elegans] 8.0E-64
blast NP_501433 T26A8.3 [Caenorhabditis elegans] gb|AAA85754.1| Hypothetical protein T26A8.3 [Caenorhabditis elegans] 4.0E-23
blast AAC05111 Hypothetical protein F17E9.2 [Caenorhabditis elegans] ref|NP_501415.1| F17E9.2 [Caenorhabditis elegans] 3.0E-22
blast NP_501433 T26A8.3 [Caenorhabditis elegans] gb|AAA85754.1| Hypothetical protein T26A8.3 [Caenorhabditis elegans] 6.0E-22
blast AAF59621 Hypothetical protein Y59H11AR.3 [Caenorhabditis elegans] ref|NP_501466.1| Y59H11AR.3 [Caenorhabditis elegans] 1.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501417.2 1 7-29
D2096.5 1 7-29
SNAP00000025667 1 7-29
GENEFINDER00000025694 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:182770_AT
ggaagtcgaagctctagtgaccacattccattttaatggtttcttgtcttgtggattgag
tacagttgacttttttgtccagaagttgcaatatgagtatgagatctactatttgattga
gcacaattgcactcctgctggaaacaagaaaaaggagtcaaaaattaatgttaaaagttt
cccagtgattaatggccatctttggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTCGAAGCTCTAGTGACCACA 140 531 69 Antisense
TCTAGTGACCACATTCCATTTTAAT 156 613 81 Antisense
CATTTTAATGGTTTCTTGTCTTGTG 129 215 97 Antisense
GTTTCTTGTCTTGTGGATTGAGTAC 128 451 107 Antisense
GAGTACAGTTGACTTTTTTGTCCAG 670 397 126 Antisense
GACTTTTTTGTCCAGAAGTTGCAAT 204 373 136 Antisense
GAGATCTACTATTTGATTGAGCACA 212 395 169 Antisense
GATTGAGCACAATTGCACTCCTGCT 666 433 183 Antisense
ATTGCACTCCTGCTGGAAACAAGAA 649 5 194 Antisense
GTTTCCCAGTGATTAATGGCCATCT 582 449 245 Antisense
CCAGTGATTAATGGCCATCTTTGGC 188 271 250 Antisense
Sequence Source Affymetrix Proprietary Database