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[182769_at] 7TM chemoreceptor, srw family

Description T05G11.4 /REP_DB=WormBase Gene ID /WP=CE18933 /TR=Q9XXJ8 /GB=CAA19432.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 18      6grp_cgc > 96      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 4.5
(-3)
A 		27.6
(1.3)
A 		8.6
(-2.2)
A 		36.5
(3)
A 		32
B 4.5
(-3)
A 		29.1
(3)
A 		5.6
(-2.7)
A 		28.1
(2.8)
A 		25
C 3.1
(-3)
A 		5.1
(-2.8)
A 		11.5
(-2.1)
A 		56.2
(3)
P 		53
avr 4
(-3) 		20.6
(-0.3) 		8.6
(-2.2) 		40.3
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 5.9
(0.7)
A 		4.5
(-1.4)
A 		7.4
(2.9)
A 		5.6
(0.2)
A 		3.4
(-3)
A 		7.5
(3)
A 		4
B 7.9
(-1.8)
A 		9.1
(-1.4)
A 		4.8
(-2.9)
A 		21.7
(3)
A 		15.9
(1)
A 		4.6
(-3)
A 		17
C 2.1
(-3)
A 		12
(-1.8)
A 		5.6
(-2.6)
A 		50
(3)
A 		17
(-1.1)
A 		2.7
(-2.9)
A 		48
avr 5.3
(-2.9) 		8.5
(-2) 		5.9
(-2.7) 		25.8
(3) 		12.1
(-0.9) 		4.9
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.6
(-3)
A 		6
(3)
A 		2.3
(-2)
A 		5.3
(2)
A 		4
B 1.4
(-2.9)
A 		7.2
(3)
A 		1.3
(-3)
A 		6
(1.8)
A 		6
C 1
(-3)
A 		1.5
(-2.6)
A 		4
(-0.9)
A 		9.5
(3)
P 		9
avr 1.3
(-3) 		4.9
(0.9) 		2.5
(-1.7) 		6.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.1
(-2.3)
A 		1.6
(1.5)
A 		1.6
(1.5)
A 		1.4
(-0)
A 		1
(-3)
A 		1.8
(3)
A 		1
B 2.8
(-1.2)
A 		3
(-1)
A 		1.2
(-3)
A 		5.8
(2.2)
A 		6.5
(3)
A 		1.7
(-2.4)
A 		5
C 0.8
(-3)
A 		3.7
(-1.1)
A 		1.4
(-2.6)
A 		10.1
(3)
A 		5.5
(0)
A 		0.9
(-2.9)
A 		9
avr 1.6
(-2.7) 		2.8
(-1.1) 		1.4
(-3) 		5.8
(3) 		4.3
(1) 		1.5
(-2.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182769_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12712
Sequence Type Exemplar sequence
Representative Public ID T05G11.4 NCBI
Target Description T05G11.4 /REP_DB=WormBase Gene ID /WP=CE18933 /TR=Q9XXJ8 /GB=CAA19432.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074591 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-27) (srw-27) mRNA, complete cds. 11/11 None
SNAP00000043858 ENSEMBL cdna:SNAP chromosome:CEL140:V:15936322:15939665:1 9/11 None
GENEFINDER00000043864 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15936107:15939665:1 11/11 None
T05G11.4 ENSEMBL cdna:known chromosome:CEL140:V:15936107:15937560:1 gene:T05G11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15936106-15937560(+) 97.42 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-27
Ensembl T05G11.4
Entrez Gene 188145 Entrez gene
SwissProt Q9XXJ8 EMBL-EBI
WormBase CE18933 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19432 Hypothetical protein T05G11.4 [Caenorhabditis elegans] ref|NP_506992.1| Serpentine Receptor, class W family member (srw-27) [Caenorhabditis elegans] 1.0E-134
blast CAA19432 Hypothetical protein T05G11.4 [Caenorhabditis elegans] ref|NP_506992.1| Serpentine Receptor, class W family member (srw-27) [Caenorhabditis elegans] 1.0E-130
blast CAA19432 Hypothetical protein T05G11.4 [Caenorhabditis elegans] ref|NP_506992.1| Serpentine Receptor, class W family member (srw-27) [Caenorhabditis elegans] 3.0E-86
blast CAB04560 Hypothetical protein K03D7.2 [Caenorhabditis elegans] ref|NP_507435.2| Serpentine Receptor, class W family member (srw-31) [Caenorhabditis elegans] 2.0E-54
blast CAB04560 Hypothetical protein K03D7.2 [Caenorhabditis elegans] ref|NP_507435.2| Serpentine Receptor, class W family member (srw-31) [Caenorhabditis elegans] 4.0E-54
blast CAB04181 Hypothetical protein F26D2.11 [Caenorhabditis elegans] ref|NP_507151.1| Serpentine Receptor, class W family member (srw-29) [Caenorhabditis elegans] 9.0E-53
blast CAB04181 Hypothetical protein F26D2.11 [Caenorhabditis elegans] ref|NP_507151.1| Serpentine Receptor, class W family member (srw-29) [Caenorhabditis elegans] 2.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.5E-33
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.5E-33
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 8.0E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506992.1 6 2-19,49-66,78-100,153-175,200-222,237-259
T05G11.4 6 2-19,49-66,78-100,153-175,200-222,237-259
SNAP00000043858 5 20-42,96-118,143-165,169-191,204-226
GENEFINDER00000043864 8 2-19,49-66,78-100,153-175,200-222,237-259,320-337,357-374
Sequence
Target Sequence 
>C. ELEGANS:182769_AT
accacaattcttataatccccttctggataccccattactcacaagaacttgtcatggaa
cctggaagatggattcctctttcgaattgtcttgtattctcggaaaactcgaccaaaatg
caatttatttttgaagagaccactatttttggaagcactgaagtttatatttatgctctt
gtaatcgagggagttgtatttcaattaattccatctattattcttccaatagcaactgtt
gtgctaattttttatttgaggaaaaccaagaaaacttcagtctcaacaaaaagcttatca
aaccataaagacacaattcgatcgatgaaacttgtcacattcatgacaatatccttttta
atctcaactactcctcacgggcttatgtacgtttttggaccttttctagttgagatacca
gtcattttaatgatatactcaagatttggtctgatattggtatttttaacaactgtcaat
ggagttgcccacttttccgtctattacttcatgtcctctcgttatcgtaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCACAATTCTTATAATCCCCTTCT 345 83 280 Antisense
TGGATACCCCATTACTCACAAGAAC 539 549 304 Antisense
ACAAGAACTTGTCATGGAACCTGGA 322 111 321 Antisense
GATGGATTCCTCTTTCGAATTGTCT 646 407 347 Antisense
ATTGTCTTGTATTCTCGGAAAACTC 380 3 365 Antisense
GAGACCACTATTTTTGGAAGCACTG 244 395 415 Antisense
ATCCTTTTTAATCTCAACTACTCCT 508 37 630 Antisense
CTACTCCTCACGGGCTTATGTACGT 274 225 647 Antisense
GGACCTTTTCTAGTTGAGATACCAG 571 523 676 Antisense
TGTCAATGGAGTTGCCCACTTTTCC 172 559 753 Antisense
CTTCATGTCCTCTCGTTATCGTAAA 314 221 786 Antisense
Sequence Source Affymetrix Proprietary Database