[Home] | [Total List]

[182767_at]

Description K08H10.3 /REP_DB=WormBase Gene ID /WP=CE18876 /TR=Q9XU85 /GB=CAB05542.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 57      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 90
(-3)
A 		152.5
(1.7)
A 		169.9
(3)
A 		89.9
(-3)
A 		80
B 137.4
(-2.2)
A 		179.9
(-0.5)
A 		272
(3)
P 		115.6
(-3)
A 		156
C 110.8
(-2.1)
A 		218.4
(3)
A 		214.1
(2.8)
A 		91.4
(-3)
A 		127
avr 112.7
(-2.3) 		183.6
(1.2) 		218.7
(3) 		99
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 96.1
(0.7)
A 		141.2
(3)
P 		45
(-1.8)
A 		130.9
(2.5)
M 		21.7
(-3)
A 		69.9
(-0.6)
A 		120
B 119.4
(3)
P 		114.8
(2.7)
P 		99.8
(1.7)
A 		62
(-0.7)
A 		41
(-2.1)
A 		27
(-3)
A 		92
C 143.4
(1.3)
P 		113.2
(-0)
A 		180.2
(3)
P 		69.3
(-2)
A 		159.5
(2.1)
A 		48
(-3)
A 		132
avr 119.6
(2.7) 		123.1
(3) 		108.3
(1.8) 		87.4
(0.1) 		74.1
(-0.9) 		48.3
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 32.8
(0.8)
A 		33.1
(0.8)
A 		44.4
(3)
A 		13.2
(-3)
A 		31
B 43.8
(-0)
A 		44.4
(0.1)
A 		63
(3)
P 		24.6
(-3)
A 		38
C 36.7
(-0.8)
A 		62.8
(1.8)
A 		74.6
(3)
A 		15.4
(-3)
A 		59
avr 37.8
(-0.2) 		46.8
(1.1) 		60.7
(3) 		17.7
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 17.7
(-1.5)
A 		50.2
(3)
P 		9.8
(-2.5)
A 		33.2
(0.7)
M 		6.5
(-3)
A 		17
(-1.6)
A 		44
B 41.5
(3)
P 		38.2
(2.4)
P 		24.2
(-0.3)
A 		16.4
(-1.8)
A 		16.6
(-1.8)
A 		10.1
(-3)
A 		31
C 53.1
(3)
P 		34.5
(0.2)
A 		45.9
(1.9)
P 		13.9
(-3)
A 		51.6
(2.8)
A 		16.1
(-2.7)
A 		39
avr 37.4
(2.2) 		41
(3) 		26.6
(-0.2) 		21.2
(-1.5) 		24.9
(-0.6) 		14.4
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182767_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11491
Sequence Type Exemplar sequence
Representative Public ID K08H10.3 NCBI
Target Description K08H10.3 /REP_DB=WormBase Gene ID /WP=CE18876 /TR=Q9XU85 /GB=CAB05542.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073173(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073173 NCBI Caenorhabditis elegans K08H10.3 (K08H10.3) mRNA, complete cds. 11/11 None
K08H10.3 ENSEMBL cdna:known chromosome:CEL140:V:10014505:10016170:1 gene:K08H10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005155 6/11 Cross Hyb Matching Probes None
GENEFINDER00000005162 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10014504-10016170(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08H10.3
Entrez Gene 187180 Entrez gene
SwissProt Q9XU85 EMBL-EBI
WormBase CE18876 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05542 Hypothetical protein K08H10.3 [Caenorhabditis elegans] ref|NP_505574.1| K08H10.3 [Caenorhabditis elegans] 2.0E-64
blast CAE61078 Hypothetical protein CBG04828 [Caenorhabditis briggsae] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:182767_AT
caaccatcaccttacagcaagacgagatgtccgaatctgctgaccaccttctcgatgaat
tgagcaagaagctcgttgacgaggttatcccagttgcacaaggacaagttggaaaccagc
atttcgatgagccaaaaagtcaaaaaacgccaccgtcttctttgaatgactcgtacgctg
aagaactactcgaagcgaaactcatcaacactgatgagtccagcgtaagtccttttttgt
tctattttactccaacatttccaaacggacaatttcctggtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCATCACCTTACAGCAAGACGA 292 187 35 Antisense
GACGAGATGTCCGAATCTGCTGACC 383 379 55 Antisense
CTGACCACCTTCTCGATGAATTGAG 196 239 74 Antisense
TGACGAGGTTATCCCAGTTGCACAA 346 571 111 Antisense
GGAAACCAGCATTTCGATGAGCCAA 121 527 145 Antisense
GCCACCGTCTTCTTTGAATGACTCG 471 279 183 Antisense
GACTCGTACGCTGAAGAACTACTCG 339 373 202 Antisense
ACTCGAAGCGAAACTCATCAACACT 37 99 222 Antisense
ATGAGTCCAGCGTAAGTCCTTTTTT 675 43 248 Antisense
TTCTATTTTACTCCAACATTTCCAA 181 691 274 Antisense
TCCAAACGGACAATTTCCTGGTCAC 625 587 294 Antisense
Sequence Source Affymetrix Proprietary Database