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[182766_at]

Description T08G3.11 /REP_DB=WormBase Gene ID /WP=CE18942 /TR=Q9XU54 /GB=CAB05790.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 1
(-3)
A 		4.7
(-2)
A 		23.8
(3)
A 		7.8
(-1.2)
A 		23
B 13.1
(0.6)
A 		21.3
(3)
A 		9.2
(-0.5)
A 		0.6
(-3)
A 		21
C 12.8
(-3)
A 		13.4
(-2.8)
A 		16.3
(-2)
A 		34.3
(3)
A 		22
avr 9
(-3) 		13.1
(0.3) 		16.4
(3) 		14.2
(1.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 2.8
(-3)
A 		8
(-0.7)
A 		16.4
(3)
A 		9.6
(0)
A 		3.5
(-2.7)
A 		4.4
(-2.3)
A 		14
B 29.1
(3)
A 		12.7
(-0.5)
A 		17.4
(0.5)
A 		24.6
(2)
A 		1
(-3)
A 		6.3
(-1.9)
A 		28
C 12.2
(-0)
A 		1.5
(-2.9)
A 		8.9
(-0.9)
A 		23.2
(3)
A 		1.3
(-3)
A 		12
(-0.1)
A 		22
avr 14.7
(1.5) 		7.4
(-1.1) 		14.2
(1.3) 		19.1
(3) 		1.9
(-3) 		7.6
(-1) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.4
(-3)
A 		1
(-2.4)
A 		6.2
(3)
A 		1.1
(-2.3)
A 		6
B 4.2
(1.7)
A 		5.3
(3)
A 		2.1
(-0.7)
A 		0.1
(-3)
A 		5
C 4.2
(-1.8)
A 		3.8
(-3)
A 		5.7
(2.7)
A 		5.8
(3)
A 		2
avr 2.9
(-1.5) 		3.4
(-0.3) 		4.7
(3) 		2.3
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.9
(1.6)
A 		3.6
(3)
A 		2.4
(0.7)
A 		1
(-2)
A 		1.1
(-1.8)
A 		3
B 10.1
(3)
A 		4.2
(-0.6)
A 		4.2
(-0.6)
A 		6.5
(0.8)
A 		0.4
(-3)
A 		2.3
(-1.8)
A 		10
C 4.5
(2.7)
A 		0.5
(-2.9)
A 		2.3
(-0.3)
A 		4.7
(3)
A 		0.4
(-3)
A 		4
(2)
A 		4
avr 5
(3) 		2.5
(-0.4) 		3.4
(0.8) 		4.5
(2.3) 		0.6
(-3) 		2.5
(-0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182766_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14160
Sequence Type Exemplar sequence
Representative Public ID T08G3.11 NCBI
Target Description T08G3.11 /REP_DB=WormBase Gene ID /WP=CE18942 /TR=Q9XU54 /GB=CAB05790.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074767 NCBI Caenorhabditis elegans T08G3.11 (T08G3.11) mRNA, complete cds. 11/11 None
SNAP00000031139 ENSEMBL cdna:SNAP chromosome:CEL140:V:16481280:16481957:-1 11/11 None
GENEFINDER00000031146 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16480545:16481713:-1 11/11 None
T08G3.11 ENSEMBL cdna:known chromosome:CEL140:V:16481280:16481647:-1 gene:T08G3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16481279-16481647(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08G3.11
Entrez Gene 188302 Entrez gene
SwissProt Q9XU54 EMBL-EBI
WormBase CE18942 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05790 Hypothetical protein T08G3.11 [Caenorhabditis elegans] ref|NP_507168.1| T08G3.11 [Caenorhabditis elegans] 8.0E-60
blast CAB05790 Hypothetical protein T08G3.11 [Caenorhabditis elegans] ref|NP_507168.1| T08G3.11 [Caenorhabditis elegans] 2.0E-59
blast CAA16165 Hypothetical protein F57E7.2 [Caenorhabditis elegans] ref|NP_507170.1| F57E7.2 [Caenorhabditis elegans] 1.0E-39
blast CAA16165 Hypothetical protein F57E7.2 [Caenorhabditis elegans] ref|NP_507170.1| F57E7.2 [Caenorhabditis elegans] 4.0E-26
blast CAA16165 Hypothetical protein F57E7.2 [Caenorhabditis elegans] ref|NP_507170.1| F57E7.2 [Caenorhabditis elegans] 2.0E-23
blast CAI79168 Hypothetical protein F11A5.16 [Caenorhabditis elegans] ref|NP_001023788.1| F11A5.16 [Caenorhabditis elegans] 1.0E-21
blast CAI79168 Hypothetical protein F11A5.16 [Caenorhabditis elegans] ref|NP_001023788.1| F11A5.16 [Caenorhabditis elegans] 7.0E-21
Sequence
Target Sequence 
>C. ELEGANS:182766_AT
tatttgtatagcttcaaggccaagaaaaatcagattgactatctatgcaagactgctatt
tcggaaggaatattcaataaagaagattctgaaaatatcagaaaggtttattgggatctt
cacgcgtggtatgatatcgagcgtgcgcaaagcaagttttttgatccgatgtacagtggg
tatctggatgaaaacttggacccagcgagcctattgaagctgaaggttatttctgacaaa
tatctcaacgaaaacaagaagcagaagctgcttttgacatatcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTGTATAGCTTCAAGGCCAAGA 432 659 22 Antisense
GATTGACTATCTATGCAAGACTGCT 155 435 54 Antisense
ATGCAAGACTGCTATTTCGGAAGGA 384 43 66 Antisense
TTATTGGGATCTTCACGCGTGGTAT 705 675 129 Antisense
CGTGGTATGATATCGAGCGTGCGCA 604 243 146 Antisense
GAGCGTGCGCAAAGCAAGTTTTTTG 344 385 160 Antisense
GATCCGATGTACAGTGGGTATCTGG 138 417 184 Antisense
AAAACTTGGACCCAGCGAGCCTATT 326 129 212 Antisense
TGGACCCAGCGAGCCTATTGAAGCT 512 545 218 Antisense
GAAGCTGAAGGTTATTTCTGACAAA 344 341 237 Antisense
CAGAAGCTGCTTTTGACATATCACA 404 205 283 Antisense
Sequence Source Affymetrix Proprietary Database