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[182765_at]

Description ZK994.6 /REP_DB=WormBase Gene ID /WP=CE15493 /TR=O44088 /GB=AAB88612.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 10      6grp_total > 16      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 214.9
(2.1)
P 		92.3
(-1.4)
P 		38.6
(-3)
A 		246.1
(3)
P 		208
B 207.8
(3)
P 		133.8
(-0.2)
A 		70.9
(-3)
A 		174.1
(1.5)
P 		137
C 158.8
(0.6)
P 		120.5
(-0.8)
M 		57
(-3)
P 		227
(3)
P 		170
avr 193.8
(2.2) 		115.5
(-0.8) 		55.5
(-3) 		215.7
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 151.5
(3)
P 		113.5
(-0.5)
P 		102.4
(-1.5)
P 		106.7
(-1.1)
A 		92.3
(-2.5)
P 		86.6
(-3)
P 		65
B 185.5
(3)
P 		143.5
(1.2)
P 		117.7
(0.2)
A 		42.4
(-3)
A 		136.8
(1)
P 		55
(-2.5)
P 		143
C 146.9
(3)
P 		144.9
(2.9)
P 		110.9
(0.8)
A 		62.2
(-2.1)
A 		47.2
(-3)
P 		115.9
(1.1)
P 		100
avr 161.3
(3) 		134
(1.2) 		110.3
(-0.4) 		70.4
(-3) 		92.1
(-1.6) 		85.8
(-2) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 78.2
(3)
P 		20
(-2.1)
P 		10.1
(-3)
A 		36
(-0.7)
P 		68
B 66.3
(3)
P 		33
(-1)
A 		16.4
(-3)
A 		37.1
(-0.5)
P 		50
C 52.6
(3)
P 		34.6
(-0.3)
M 		19.9
(-3)
P 		38.3
(0.4)
P 		33
avr 65.7
(3) 		29.2
(-1.4) 		15.5
(-3) 		37.1
(-0.4) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 27.9
(-0.9)
P 		40.4
(3)
P 		22.3
(-2.6)
P 		27.1
(-1.1)
A 		27.9
(-0.9)
P 		21.1
(-3)
P 		19
B 64.6
(3)
P 		47.8
(1.1)
P 		28.6
(-1)
A 		11.2
(-3)
A 		55.6
(2)
P 		20.5
(-2)
P 		53
C 54.5
(3)
P 		44.2
(1.5)
P 		28.2
(-0.8)
A 		12.5
(-3)
A 		15.3
(-2.6)
P 		38.8
(0.8)
P 		42
avr 49
(3) 		44.1
(2.1) 		26.4
(-1.2) 		16.9
(-3) 		32.9
(-0) 		26.8
(-1.1) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182765_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11823
Sequence Type Exemplar sequence
Representative Public ID ZK994.6 NCBI
Target Description ZK994.6 /REP_DB=WormBase Gene ID /WP=CE15493 /TR=O44088 /GB=AAB88612.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072788(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072788 NCBI Caenorhabditis elegans ZK994.6 (ZK994.6) mRNA, complete cds. 11/11 None
GENEFINDER00000022135 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8505180:8509915:-1 11/11 None
ZK994.6 ENSEMBL cdna:known chromosome:CEL140:V:8505180:8507170:-1 gene:ZK994.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022130 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8505180-8507171(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK994.6
Entrez Gene 191486 Entrez gene
SwissProt O44088 EMBL-EBI
WormBase CE15493 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88612 Hypothetical protein ZK994.6 [Caenorhabditis elegans] ref|NP_505189.1| ZK994.6 [Caenorhabditis elegans] 2.0E-50
blast AAB88612 Hypothetical protein ZK994.6 [Caenorhabditis elegans] ref|NP_505189.1| ZK994.6 [Caenorhabditis elegans] 3.0E-50
blast CAE58398 Hypothetical protein CBG01527 [Caenorhabditis briggsae] 7.0E-46
blast CAE58398 Hypothetical protein CBG01527 [Caenorhabditis briggsae] 1.0E-45
Sequence
Target Sequence 
>C. ELEGANS:182765_AT
atgctcaatcaaacgtttactatgggttcaaacaaggaagaaagatgcagagaattttgt
attgaagatgctataaatggatttataccgagggctagaagcagtggaccgagaagtagc
atgaagaataagattgatgagaatgtgcgaagggttcgatctgaaactgcttcactcttc
tcttcaacatgtaaacttccacagcttgatggttcaattgcaagtgagaaaaagacgtgc
acaatccgcccgtggagccgcacccaagacgagcttcgtaaattcaaggagacactgaaa
tcgactacggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCAATCAAACGTTTACTATGG 23 43 13 Antisense
AATGGATTTATACCGAGGGCTAGAA 29 103 88 Antisense
AGGGCTAGAAGCAGTGGACCGAGAA 342 59 103 Antisense
GCGAAGGGTTCGATCTGAAACTGCT 242 289 159 Antisense
CGATCTGAAACTGCTTCACTCTTCT 162 249 169 Antisense
TCACTCTTCTCTTCAACATGTAAAC 328 627 184 Antisense
CAACATGTAAACTTCCACAGCTTGA 447 183 197 Antisense
AACTTCCACAGCTTGATGGTTCAAT 700 137 206 Antisense
AGAAAAAGACGTGCACAATCCGCCC 635 71 239 Antisense
CCGCACCCAAGACGAGCTTCGTAAA 270 263 270 Antisense
AGGAGACACTGAAATCGACTACGGT 182 57 299 Antisense
Sequence Source Affymetrix Proprietary Database