[Home] | [Total List]

[182764_at]

Description Y54E2A.9 /REP_DB=WormBase Gene ID /WP=CE20308 /TR=Q9XWI4 /GB=CAA21683.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 10.9
(-2.1)
A 		46.6
(3)
A 		4.9
(-3)
A 		39.6
(2)
A 		42
B 22.4
(1.8)
A 		9.3
(-3)
A 		25.6
(3)
A 		19.5
(0.8)
A 		16
C 12.4
(-2.1)
A 		1.7
(-3)
A 		38.2
(0.1)
A 		71.7
(3)
A 		70
avr 15.2
(-3) 		19.2
(-2.2) 		22.9
(-1.4) 		43.6
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 3.5
(-2.8)
A 		1.5
(-3)
A 		11.1
(-2.1)
A 		28.1
(-0.6)
A 		55.5
(1.8)
A 		68.4
(3)
A 		67
B 3
(-3)
A 		20.7
(-1.7)
A 		6.5
(-2.8)
A 		21.6
(-1.7)
A 		83.1
(2.7)
A 		87.3
(3)
A 		84
C 32.1
(-2.7)
A 		46.3
(-1.7)
A 		30.9
(-2.7)
A 		27.2
(-3)
A 		40.8
(-2.1)
A 		113.6
(3)
P 		86
avr 12.9
(-3) 		22.8
(-2.2) 		16.2
(-2.7) 		25.6
(-2) 		59.8
(0.7) 		89.8
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4
(-1.2)
A 		10.1
(3)
A 		1.3
(-3)
A 		5.8
(0.1)
A 		9
B 7.1
(3)
A 		2.3
(-3)
A 		5.9
(1.5)
A 		4.1
(-0.8)
A 		5
C 4.1
(-1.3)
A 		0.5
(-3)
A 		13.3
(3)
A 		12.1
(2.4)
A 		13
avr 5.1
(-1.4) 		4.3
(-3) 		6.8
(2) 		7.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.5
(-3)
A 		2.4
(-2.3)
A 		7.1
(-0.6)
A 		16.8
(3)
A 		16.6
(2.9)
A 		16
B 1.1
(-3)
A 		6.9
(-1.9)
A 		1.6
(-2.9)
A 		5.7
(-2.2)
A 		33.7
(3)
A 		32.5
(2.8)
A 		33
C 11.9
(-1.8)
A 		14.1
(-1.4)
A 		7.9
(-2.6)
A 		5.5
(-3)
A 		13.2
(-1.6)
A 		38
(3)
P 		33
avr 4.5
(-2.9) 		7.2
(-2.2) 		4
(-3) 		6.1
(-2.5) 		21.2
(1.1) 		29
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182764_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3765
Sequence Type Exemplar sequence
Representative Public ID Y54E2A.9 NCBI
Target Description Y54E2A.9 /REP_DB=WormBase Gene ID /WP=CE20308 /TR=Q9XWI4 /GB=CAA21683.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064664(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064664 NCBI Caenorhabditis elegans Y54E2A.9 (Y54E2A.9) mRNA, complete cds. 11/11 None
SNAP00000025435 ENSEMBL cdna:SNAP chromosome:CEL140:II:14785125:14785885:-1 11/11 None
GENEFINDER00000025443 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14783043:14785885:-1 11/11 None
Y54E2A.9 ENSEMBL cdna:known chromosome:CEL140:II:14785125:14785885:-1 gene:Y54E2A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14785121-14785882(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E2A.9
Entrez Gene 190258 Entrez gene
SwissProt Q9XWI4 EMBL-EBI
WormBase CE20308 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21683 Hypothetical protein Y54E2A.9 [Caenorhabditis elegans] ref|NP_497065.1| Y54E2A.9 [Caenorhabditis elegans] 1.0E-112
blast CAA21683 Hypothetical protein Y54E2A.9 [Caenorhabditis elegans] ref|NP_497065.1| Y54E2A.9 [Caenorhabditis elegans] 1.0E-111
blast AAF39967 Hypothetical protein T02H6.9 [Caenorhabditis elegans] ref|NP_493787.1| T02H6.9 [Caenorhabditis elegans] 3.0E-39
blast AAF39967 Hypothetical protein T02H6.9 [Caenorhabditis elegans] ref|NP_493787.1| T02H6.9 [Caenorhabditis elegans] 3.0E-38
blast AAK85474 Hypothetical protein F28A10.8 [Caenorhabditis elegans] ref|NP_493828.1| F28A10.8 [Caenorhabditis elegans] 3.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 6.0E-107
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 3.6E-106
Sequence
Target Sequence 
>C. ELEGANS:182764_AT
gttcaattgccatcttggcttcgctcctcttggcgatcagtgctgagcccacaatcctcc
agtcgccacgtgtcaccaattggggggaatggactggaaagagatgtccttctggccaat
ttgttcgtggactcagggtcaagtacgacaatgcccaatatttcagcgatcagaccggta
tcaatgcaattgagcttgtttgccataatcgctctgatcaggttgacacatacctcaaga
gtggtgaaggcccacatggagactggctagaactccagtactgccctgaaggagaatatg
gtgttggttttgcgattcgatcagcagggcctctacgcggtagatttgatgattacggtg
tagtaaattttcaactatattgtggtcaaccgaacggaaaaagaaactcgtggcaccgac
ttacaggagttacattcctaaattatcaaaaaggggagtggagcagcaatcagtactgtc
aatctggaaaagttgtgtgtggaatcaatacgcaaatcgaaacggatcagggttggttcg
gtgatgacacgggtctcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAATTGCCATCTTGGCTTCGCT 185 445 20 Antisense
CTCCTCTTGGCGATCAGTGCTGAGC 111 235 43 Antisense
GAAAGAGATGTCCTTCTGGCCAATT 229 361 116 Antisense
CAATTTGTTCGTGGACTCAGGGTCA 638 179 136 Antisense
GACAATGCCCAATATTTCAGCGATC 241 365 166 Antisense
GCTTGTTTGCCATAATCGCTCTGAT 243 307 213 Antisense
GAAGGCCCACATGGAGACTGGCTAG 643 331 265 Antisense
TGGCTAGAACTCCAGTACTGCCCTG 389 545 283 Antisense
ATGGTGTTGGTTTTGCGATTCGATC 508 49 317 Antisense
AAGAAACTCGTGGCACCGACTTACA 52 153 420 Antisense
GTTCGGTGATGACACGGGTCTCAAC 675 437 555 Antisense
Sequence Source Affymetrix Proprietary Database