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[182763_at]

Description T05C3.3 /REP_DB=WormBase Gene ID /WP=CE13225 /TR=O16300 /GB=AAB65360.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 61.4
(2.6)
P 		45.9
(-1)
A 		62.9
(3)
A 		37.6
(-3)
A 		25
B 63.9
(3)
P 		38.8
(-3)
A 		39.6
(-2.8)
A 		48.8
(-0.6)
P 		25
C 41.5
(1.8)
A 		48.4
(3)
M 		20
(-1.8)
A 		12.8
(-3)
A 		36
avr 55.6
(3) 		44.4
(0) 		40.8
(-0.9) 		33.1
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 23
(-0.2)
A 		12.4
(-1.7)
A 		45.5
(3)
A 		44.5
(2.9)
P 		3.1
(-3)
A 		17.5
(-1)
A 		42
B 31.2
(-3)
A 		38.4
(-0.8)
P 		50.6
(3)
A 		49.5
(2.7)
A 		38.3
(-0.8)
M 		34.2
(-2.1)
M 		19
C 39.7
(2.6)
A 		5.7
(-3)
A 		24.2
(0)
A 		33.6
(1.6)
A 		42.2
(3)
M 		22
(-0.3)
A 		37
avr 31.3
(0.2) 		18.8
(-3) 		40.1
(2.4) 		42.5
(3) 		27.9
(-0.7) 		24.6
(-1.5) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 22.4
(3)
P 		10
(-1.4)
A 		16.5
(0.9)
A 		5.5
(-3)
A 		17
B 20.4
(3)
P 		9.6
(-2.8)
A 		9.2
(-3)
A 		10.4
(-2.4)
P 		11
C 13.7
(2.9)
A 		13.9
(3)
M 		7
(-0.5)
A 		2.2
(-3)
A 		12
avr 18.8
(3) 		11.2
(-0.6) 		10.9
(-0.7) 		6
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.2
(-1.1)
A 		4.4
(-1)
A 		9.9
(2.2)
A 		11.3
(3)
P 		0.9
(-3)
A 		4.3
(-1)
A 		10
B 10.8
(-3)
A 		12.8
(-0.5)
P 		12.3
(-1.1)
A 		13.1
(-0.1)
A 		15.6
(3)
M 		12.8
(-0.5)
M 		5
C 14.7
(3)
A 		1.7
(-3)
A 		6.1
(-1)
A 		6.8
(-0.6)
A 		13.7
(2.5)
M 		7.4
(-0.4)
A 		13
avr 9.9
(2.3) 		6.3
(-3) 		9.4
(1.5) 		10.4
(3) 		10.1
(2.6) 		8.2
(-0.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11362
Sequence Type Exemplar sequence
Representative Public ID T05C3.3 NCBI
Target Description T05C3.3 /REP_DB=WormBase Gene ID /WP=CE13225 /TR=O16300 /GB=AAB65360.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072047(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072047 NCBI Caenorhabditis elegans T05C3.3 (T05C3.3) mRNA, complete cds. 11/11 None
SNAP00000006786 ENSEMBL cdna:SNAP chromosome:CEL140:V:5476937:5477800:1 11/11 None
GENEFINDER00000006795 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5473815:5477800:1 11/11 None
T05C3.3 ENSEMBL cdna:known chromosome:CEL140:V:5473815:5477800:1 gene:T05C3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026565 7/11 Cross Hyb Matching Probes None
SNAP00000004337 7/11 Cross Hyb Matching Probes None
GENEFINDER00000004340 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5473814-5477800(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05C3.3
Entrez Gene 188118 Entrez gene
SwissProt O16300 EMBL-EBI
WormBase CE13225 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504448 T05C3.3 [Caenorhabditis elegans] gb|AAB65360.1| Hypothetical protein T05C3.3 [Caenorhabditis elegans] 0.0
blast NP_001021736 Y20F4.8 [Caenorhabditis elegans] gb|AAY55885.1| Hypothetical protein Y20F4.8 [Caenorhabditis elegans] 1.0E-119
blast NP_504448 T05C3.3 [Caenorhabditis elegans] gb|AAB65360.1| Hypothetical protein T05C3.3 [Caenorhabditis elegans] 1.0E-106
blast NP_001021736 Y20F4.8 [Caenorhabditis elegans] gb|AAY55885.1| Hypothetical protein Y20F4.8 [Caenorhabditis elegans] 2.0E-96
blast CAE71432 Hypothetical protein CBG18343 [Caenorhabditis briggsae] 6.0E-16
Sequence
Target Sequence 
>C. ELEGANS:182763_AT
gaaggcgacgtcgaggctgaaacctgaaattggtcaagtggttttggtattccagaaatt
gctaccgcgttatgcatggccaatggcgagaatcgtggagctgaacaggaaaaatccgga
tggagaagtacaatctgtaatggtaaaaatgggaaagagaattgtcgagaaaccagtgaa
tctgctgattccactggagaatacgggaattcgaattcaagaagctcaggaagaggaagt
tccaggcgatgtcatggcagccgaggacgtggatgcggccgatgagcaggaagcgggaac
agctgaaaatccagaagaagatattccgaaggaaggcgcagtagcagaagaacaggatgt
ggatgttgacaaggatccagaagaagagcgagaaaatggacgtgcacacctgaaaagagc
tgcaaaaacaagacctctcagaattccagccaaattcagagagttttctttccccggtgt
atcgcgcagaccagctctacgcgaaggaaaggaggaagaaatcgataatcgagtgcagag
gagcgcatttgcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGCGACGTCGAGGCTGAAACCT 673 331 2217 Antisense
GTATTCCAGAAATTGCTACCGCGTT 83 453 2263 Antisense
CTACCGCGTTATGCATGGCCAATGG 278 225 2278 Antisense
GAATCTGCTGATTCCACTGGAGAAT 345 329 2394 Antisense
GTTCCAGGCGATGTCATGGCAGCCG 188 441 2455 Antisense
GGCAGCCGAGGACGTGGATGCGGCC 651 535 2472 Antisense
GGATGCGGCCGATGAGCAGGAAGCG 357 513 2487 Antisense
GGACGTGCACACCTGAAAAGAGCTG 184 525 2614 Antisense
AACAAGACCTCTCAGAATTCCAGCC 427 135 2643 Antisense
TATCGCGCAGACCAGCTCTACGCGA 145 657 2696 Antisense
GAGTGCAGAGGAGCGCATTTGCGTC 605 399 2747 Antisense
Sequence Source Affymetrix Proprietary Database