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[182762_at]

Description Y59A8A.7 /REP_DB=WormBase Gene ID /WP=CE26204 /TR=Q9GRZ6 /GB=CAC14403.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 1.5
(-3)
A 		5.3
(-2.7)
A 		18.8
(-1.5)
A 		73
(3)
P 		72
B 14.2
(0.6)
A 		22.3
(3)
A 		1.7
(-3)
A 		1.8
(-3)
A 		21
C 16.2
(-2.9)
A 		22.7
(-2.2)
A 		15.2
(-3)
A 		68.7
(3)
A 		54
avr 10.6
(-3) 		16.8
(-2) 		11.9
(-2.8) 		47.8
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 27.3
(3)
A 		1.9
(-2.8)
A 		16.7
(0.6)
A 		0.9
(-3)
A 		21.9
(1.8)
A 		23.4
(2.1)
A 		26
B 20.1
(3)
A 		4.4
(-3)
A 		9.2
(-1.2)
A 		19.3
(2.7)
A 		5.5
(-2.6)
A 		12.5
(0.1)
A 		16
C 7.2
(-1.8)
A 		25
(3)
A 		18.8
(1.3)
A 		12.9
(-0.3)
A 		12.4
(-0.4)
A 		2.8
(-3)
A 		22
avr 18.2
(3) 		10.4
(-3) 		14.9
(0.5) 		11
(-2.5) 		13.3
(-0.8) 		12.9
(-1.1) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.6
(-3)
A 		1.2
(-2.6)
A 		4.9
(-0.4)
A 		10.7
(3)
P 		10
B 4.5
(1.8)
A 		5.5
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		5
C 5.4
(-2.9)
A 		6.5
(-1.9)
A 		5.3
(-3)
A 		11.6
(3)
A 		6
avr 3.5
(-3) 		4.4
(-1.7) 		3.5
(-3) 		7.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5
(1.5)
A 		0.7
(-2.5)
A 		3.6
(0.2)
A 		0.2
(-3)
A 		6.6
(3)
A 		5.7
(2.2)
A 		6
B 7
(3)
A 		1.5
(-3)
A 		2.2
(-2.2)
A 		5.1
(0.9)
A 		2.2
(-2.2)
A 		4.7
(0.5)
A 		6
C 2.7
(-1.4)
A 		7.6
(3)
A 		4.8
(0.5)
A 		2.6
(-1.5)
A 		4
(-0.2)
A 		0.9
(-3)
A 		7
avr 4.9
(3) 		3.3
(-1.2) 		3.5
(-0.7) 		2.6
(-3) 		4.3
(1.4) 		3.8
(0.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182762_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14087
Sequence Type Exemplar sequence
Representative Public ID Y59A8A.7 NCBI
Target Description Y59A8A.7 /REP_DB=WormBase Gene ID /WP=CE26204 /TR=Q9GRZ6 /GB=CAC14403.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075104
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000001052 ENSEMBL cdna:SNAP chromosome:CEL140:V:17839222:17840695:1 11/11 None
Y59A8A.7 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17839936:17840695:1 gene:Y59A8A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17839956-17840695(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y59A8A.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14401 Hypothetical protein Y59A8A.4 [Caenorhabditis elegans] ref|NP_507505.1| Serpentine Receptor, class H family member (srh-286) [Caenorhabditis elegans] 1.0E-124
blast CAA19565 Hypothetical protein Y94A7B.3 [Caenorhabditis elegans] ref|NP_507495.2| Serpentine Receptor, class H family member (srh-291) [Caenorhabditis elegans] 7.0E-58
blast CAE11298 Hypothetical protein C47A10.11 [Caenorhabditis elegans] ref|NP_001023712.1| Serpentine Receptor, class H family member (srh-290) [Caenorhabditis elegans] 1.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.8E-87
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000001052 5 10-32,53-70,110-132,166-188,193-215
Sequence
Target Sequence 
>C. ELEGANS:182762_AT
cctcaaatctttgactacgagtctgtcgaatcaaaaatctttgtgatcaccttgggcttt
actagaattgcagtacaacaagttattttcacagttttggttcttgtagaggcttgtgtt
tttgtggggcttattcgggttaatatgaataaggctatgaaagaagttcatttgtcacta
tcgaagcataccattcacatgcataaagcttttattaaagctttgaatttacagatcgca
atccccatgataaccctgtgtgctcccaccatcattggtgttttattcggatcaatcatc
atcaaccatcaaggtttcaacaatgttgtatacatttgctcatcacttcacggagtctta
tcaacacttatcatgatttatctacagaatccatacagagctgtggtgatgagaatattt
tgctcaggatgtcagagtctgcaaggaagtcagaatattgtatcgagcacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCAAATCTTTGACTACGAGTCTG 100 269 181 Antisense
GATCACCTTGGGCTTTACTAGAATT 244 417 225 Antisense
GGTTCTTGTAGAGGCTTGTGTTTTT 529 505 279 Antisense
TGTGTTTTTGTGGGGCTTATTCGGG 483 553 295 Antisense
GAAGTTCATTTGTCACTATCGAAGC 218 337 343 Antisense
ACTATCGAAGCATACCATTCACATG 659 101 357 Antisense
AGCTTTGAATTTACAGATCGCAATC 417 79 399 Antisense
ATTCGGATCAATCATCATCAACCAT 631 9 465 Antisense
TGTATACATTTGCTCATCACTTCAC 345 561 507 Antisense
TTTGCTCAGGATGTCAGAGTCTGCA 279 667 599 Antisense
GTCAGAATATTGTATCGAGCACGAA 189 465 629 Antisense
Sequence Source Affymetrix Proprietary Database