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[182760_at]

Description D2024.2 /REP_DB=WormBase Gene ID /WP=CE04291 /TR=Q18974 /GB=AAA82290.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 53      4grp_high_8_8 > 05      6grp_highest_nonorm > 81      6grp_total > 53      4grp_total > 03      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 92.6
(-2.8)
P 		87.4
(-3)
P 		101.7
(-2.4)
A 		239.6
(3)
P 		152
B 121.1
(-1.5)
P 		94.4
(-3)
P 		109.9
(-2.1)
A 		203.1
(3)
P 		109
C 145.1
(-1.1)
P 		93.2
(-3)
A 		93.1
(-3)
P 		260.2
(3)
P 		167
avr 119.6
(-1.8) 		91.7
(-3) 		101.6
(-2.6) 		234.3
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 173.7
(-2.8)
P 		256.9
(0.3)
P 		329.2
(3)
P 		272.6
(0.9)
P 		168.5
(-3)
P 		205.8
(-1.6)
P 		161
B 230.6
(-1.9)
P 		247.5
(-1.3)
P 		377.4
(3)
P 		211.7
(-2.5)
P 		200.5
(-2.9)
P 		197.1
(-3)
P 		180
C 166.3
(-2.4)
P 		306.8
(1.9)
P 		343.1
(3)
P 		338.8
(2.9)
P 		146.8
(-3)
P 		251.7
(0.2)
P 		196
avr 190.2
(-2.4) 		270.4
(0.3) 		349.9
(3) 		274.4
(0.5) 		171.9
(-3) 		218.2
(-1.4) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 33.7
(2.5)
P 		19
(-3)
P 		26.6
(-0.2)
A 		35.1
(3)
P 		16
B 38.6
(1.6)
P 		23.3
(-3)
P 		25.5
(-2.3)
A 		43.3
(3)
P 		20
C 48
(3)
P 		26.8
(-3)
A 		32.4
(-1.4)
P 		43.9
(1.8)
P 		21
avr 40.1
(2.8) 		23
(-3) 		28.2
(-1.2) 		40.8
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 32
(-3)
P 		91.4
(3)
P 		71.7
(1)
P 		69.1
(0.7)
P 		50.8
(-1.1)
P 		50.1
(-1.2)
P 		59
B 80.2
(1.1)
P 		82.4
(1.4)
P 		91.6
(3)
P 		56.1
(-3)
P 		81.5
(1.3)
P 		73.5
(-0.1)
P 		36
C 61.7
(-1.2)
P 		93.6
(3)
P 		87.3
(2.2)
P 		68.1
(-0.3)
P 		47.5
(-3)
P 		84.2
(1.8)
P 		46
avr 58
(-3) 		89.1
(3) 		83.5
(1.9) 		64.4
(-1.8) 		59.9
(-2.6) 		69.3
(-0.8) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182760_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9876
Sequence Type Exemplar sequence
Representative Public ID D2024.2 NCBI
Target Description D2024.2 /REP_DB=WormBase Gene ID /WP=CE04291 /TR=Q18974 /GB=AAA82290.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068748(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068748 NCBI Caenorhabditis elegans D2024.2 (D2024.2) mRNA, complete cds. 11/11 None
SNAP00000033328 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7244275:7245401:1 11/11 None
GENEFINDER00000033332 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7244275:7245401:1 11/11 None
D2024.2 ENSEMBL cdna:known chromosome:CEL140:IV:7244220:7245419:1 gene:D2024.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7244280-7245407(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2024.2
Entrez Gene 177499 Entrez gene
SwissProt Q18974 EMBL-EBI
WormBase CE04291 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.8891.1.S1_AT similar to arylformamidase cfa
DROSOPHILA_2:1638866_AT dm
DROSGENOME1:145901_AT dm
HU35KSUBA:RC_D52154_S_AT arylformamidase hs
HU35KSUBC:RC_W90455_R_AT arylformamidase hs
HG-U95E:78408_AT arylformamidase hs
U133_X3P:HS.118346.0.A1_3P_AT Arylformamidase hs
HG-U133_PLUS_2:240318_AT Arylformamidase hs
HG-U133B:240318_AT Arylformamidase hs
HG-U95E:81291_AT Arylformamidase hs
MOUSE430A_2:1431722_A_AT arylformamidase mm
MOE430A:1431722_A_AT arylformamidase mm
MOUSE430_2:1431722_A_AT arylformamidase mm
MG-U74BV2:110308_AT arylformamidase mm
MOE430B:1428885_AT arylformamidase mm
MOUSE430_2:1428885_AT arylformamidase mm
Protein Similarities
Method ID Description E-Value
blast NP_501149 D2024.2 [Caenorhabditis elegans] gb|AAA82290.1| Hypothetical protein D2024.2 [Caenorhabditis elegans] 1.0E-147
blast CAE61843 Hypothetical protein CBG05817 [Caenorhabditis briggsae] 2.0E-75
blast CAA16366 Hypothetical protein Y45F10A.3 [Caenorhabditis elegans] ref|NP_502605.1| Y45F10A.3 [Caenorhabditis elegans] 2.0E-38
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 0.0570000000298023
Sequence
Target Sequence 
>C. ELEGANS:182760_AT
ggagatgcatccgataagcttctgatttttattcatggaggatactgggcggcaggaacc
cgaaaagactgcttaactccagcaaggtgtgcattgaacaatgaatatgcatttgcatcg
gtaggttacggcctctcaacagaaggtagaactcttacggaaacagtggaagatgttgtg
aatggtgtggattttattttgaaattatatccgaatgtatctaatgttctggttggagga
cattcagcaggagctcatttagcaatgaacgctgttgcacgtcttcgaaatccacgaatc
agaggtctcctcttgttttccggttgctattttttggaagaactaattggcacagaaata
ggaacagatatcaatttaactactgatcaagcaaagctcaatagttgtgatttatccaag
ttagatggtctgaagttggatagtcttgttattcttggactacaagaagcaccaaaactt
atcgaacagaatcgagattttgttgcacaacaaggccagtctagaattgaggagtttcca
aacagtgggcattacacaattatgacaaatctactaaatcacacttctgggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGATGCATCCGATAAGCTTCTGA 516 517 199 Antisense
GGATACTGGGCGGCAGGAACCCGAA 441 509 238 Antisense
AAGACTGCTTAACTCCAGCAAGGTG 223 153 263 Antisense
GCATTTGCATCGGTAGGTTACGGCC 633 307 307 Antisense
GGTTACGGCCTCTCAACAGAAGGTA 16 507 322 Antisense
GGTTGGAGGACATTCAGCAGGAGCT 258 507 429 Antisense
TGAACGCTGTTGCACGTCTTCGAAA 582 573 464 Antisense
AAATCCACGAATCAGAGGTCTCCTC 302 119 486 Antisense
ATCAGAGGTCTCCTCTTGTTTTCCG 61 29 496 Antisense
GTTGCACAACAAGGCCAGTCTAGAA 313 439 700 Antisense
ATCTACTAAATCACACTTCTGGGGA 372 19 767 Antisense
Sequence Source Affymetrix Proprietary Database