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[182759_at]

Description K01A2.1 /REP_DB=WormBase Gene ID /WP=CE19510 /TR=Q9TZ49 /GB=AAC69503.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 50      6grp_total > 41      4grp_total > 52      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 139.8
(1.6)
P 		151
(3)
P 		132
(0.7)
M 		102.1
(-3)
A 		49
B 185.7
(2.5)
P 		202.7
(3)
P 		157.1
(1.6)
A 		8
(-3)
A 		195
C 241.4
(2.7)
P 		252
(3)
A 		227.4
(2.3)
P 		26.9
(-3)
A 		225
avr 189
(2.5) 		201.9
(3) 		172.2
(1.9) 		45.7
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 213
(1.5)
P 		158.8
(-0.5)
P 		211
(1.4)
P 		252.8
(3)
P 		93.4
(-2.9)
P 		91.9
(-3)
A 		161
B 146.2
(0.4)
P 		189.3
(2.2)
P 		209.2
(3)
P 		166.3
(1.2)
P 		148.2
(0.5)
P 		63
(-3)
P 		146
C 157.9
(-0.6)
P 		236.6
(3)
P 		201.2
(1.4)
P 		198
(1.2)
P 		143.3
(-1.3)
A 		105.3
(-3)
P 		131
avr 172.4
(1.3) 		194.9
(2.4) 		207.1
(3) 		205.7
(2.9) 		128.3
(-0.9) 		86.7
(-3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 50.9
(3)
P 		32.8
(-0)
P 		34.5
(0.3)
M 		14.9
(-3)
A 		36
B 59.2
(3)
P 		50.1
(2.1)
P 		36.4
(0.6)
A 		1.7
(-3)
A 		58
C 79.9
(3)
P 		72.5
(2.4)
A 		79.3
(3)
P 		4.5
(-3)
A 		75
avr 63.3
(3) 		51.8
(1.8) 		50.1
(1.6) 		7
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 39.3
(-0.6)
P 		56.5
(1.9)
P 		45.9
(0.4)
P 		64.1
(3)
P 		28.2
(-2.2)
P 		22.4
(-3)
A 		42
B 50.9
(1.2)
P 		63
(3)
P 		50.8
(1.1)
P 		44
(0.1)
P 		60.2
(2.6)
P 		23.5
(-3)
P 		40
C 58.5
(0.8)
P 		72.2
(3)
P 		51.2
(-0.4)
P 		39.8
(-2.3)
P 		46.4
(-1.2)
A 		35.2
(-3)
P 		37
avr 49.6
(0.7) 		63.9
(3) 		49.3
(0.6) 		49.3
(0.6) 		44.9
(-0.1) 		27
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182759_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5631
Sequence Type Exemplar sequence
Representative Public ID K01A2.1 NCBI
Target Description K01A2.1 /REP_DB=WormBase Gene ID /WP=CE19510 /TR=Q9TZ49 /GB=AAC69503.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061309(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061309 NCBI Caenorhabditis elegans K01A2.1 (K01A2.1) mRNA, complete cds. 9/11 None
SNAP00000016839 ENSEMBL cdna:SNAP chromosome:CEL140:II:326357:328111:1 11/11 None
GENEFINDER00000016850 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:326357:328169:1 9/11 None
K01A2.1 ENSEMBL cdna:known chromosome:CEL140:II:326357:328169:1 gene:K01A2.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:326356-328111(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01A2.1
Entrez Gene 186816 Entrez gene
SwissProt Q9TZ49 EMBL-EBI
WormBase CE35984 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69503 Hypothetical protein K01A2.1 [Caenorhabditis elegans] ref|NP_493710.2| K01A2.1 [Caenorhabditis elegans] 1.0E-151
blast CAE62868 Hypothetical protein CBG07051 [Caenorhabditis briggsae] 1.0E-105
blast AAC69503 Hypothetical protein K01A2.1 [Caenorhabditis elegans] ref|NP_493710.2| K01A2.1 [Caenorhabditis elegans] 1.0E-72
blast CAE62868 Hypothetical protein CBG07051 [Caenorhabditis briggsae] 2.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493710.2 1 33-55
K01A2.1 1 33-55
GENEFINDER00000016850 1 33-55
Sequence
Target Sequence 
>C. ELEGANS:182759_AT
gccaccctacagtaaccattgacaaacgtatcaagaaactggcagctgaaagaataataa
ccaataaaattcgatcggcagtcgacgagacactcaaaataaacggggagaatgttgtgc
tacgtggcaatgagcaagtccggattgacgcgaggaatgtgaattttgagggactgaagc
gaatggtcttcaatatttcggaagtcatggaagcccttgaaaattccaaaaacttccaca
gatatcatgtcactttttcagcgagacggaatactccatatgcgtggccgagtacgcctg
ggcgatggagccgcaagtctaccaatgtccacatcaccatccctctcggccagtctagat
ggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACCCTACAGTAACCATTGACAA 516 279 617 Antisense
GATCGGCAGTCGACGAGACACTCAA 318 419 689 Antisense
CGGGGAGAATGTTGTGCTACGTGGC 546 243 720 Antisense
GAGCAAGTCCGGATTGACGCGAGGA 579 389 748 Antisense
TTCGGAAGTCATGGAAGCCCTTGAA 428 693 813 Antisense
GATATCATGTCACTTTTTCAGCGAG 184 427 857 Antisense
GACGGAATACTCCATATGCGTGGCC 567 375 881 Antisense
CATATGCGTGGCCGAGTACGCCTGG 640 211 893 Antisense
GAGTACGCCTGGGCGATGGAGCCGC 617 399 906 Antisense
ATGGAGCCGCAAGTCTACCAATGTC 168 53 921 Antisense
CCCTCTCGGCCAGTCTAGATGGAAT 312 259 957 Antisense
Sequence Source Affymetrix Proprietary Database