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[182756_at]

Description T07F8.2 /REP_DB=WormBase Gene ID /WP=CE01390 /TR=P91439 /GB=AAB38097.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 15      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 98
(3)
P 		42.2
(-3)
A 		53.6
(-1.8)
A 		95.8
(2.8)
P 		56
B 116.5
(3)
P 		69.8
(-2.3)
A 		63.5
(-3)
A 		101.5
(1.3)
P 		53
C 80
(3)
P 		36.3
(-3)
A 		63.5
(0.7)
P 		71.4
(1.8)
P 		44
avr 98.2
(3) 		49.4
(-3) 		60.2
(-1.7) 		89.6
(1.9) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 97.7
(1)
A 		104.9
(1.6)
P 		77.1
(-0.8)
P 		121.1
(3)
P 		76.7
(-0.9)
P 		52.5
(-3)
A 		69
B 78.9
(0.5)
P 		101.8
(2.9)
P 		85.6
(1.2)
P 		102.7
(3)
P 		72.3
(-0.2)
P 		46
(-3)
A 		57
C 68
(-1.7)
P 		133.7
(3)
P 		121.1
(2.1)
P 		112.9
(1.5)
P 		97.6
(0.4)
P 		49.3
(-3)
M 		84
avr 81.5
(0) 		113.5
(3) 		94.6
(1.2) 		112.2
(2.9) 		82.2
(0.1) 		49.3
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 35.7
(3)
P 		9.2
(-3)
A 		14
(-1.9)
A 		14
(-1.9)
P 		27
B 37.1
(3)
P 		17.2
(-2.3)
A 		14.7
(-3)
A 		21.6
(-1.2)
P 		22
C 26.5
(3)
P 		10.4
(-3)
A 		22.1
(1.4)
P 		12
(-2.4)
P 		16
avr 33.1
(3) 		12.3
(-3) 		16.9
(-1.7) 		15.9
(-2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 18
(-1.7)
A 		37.3
(3)
P 		16.8
(-2)
P 		30.7
(1.4)
P 		23.2
(-0.5)
P 		12.8
(-3)
A 		25
B 27.5
(0.7)
P 		33.9
(3)
P 		20.8
(-1.7)
P 		27.2
(0.6)
P 		29.4
(1.4)
P 		17.2
(-3)
A 		17
C 25.2
(-0.9)
P 		40.8
(3)
P 		30.8
(0.5)
P 		22.7
(-1.5)
P 		31.6
(0.7)
P 		16.5
(-3)
M 		24
avr 23.6
(-0.8) 		37.3
(3) 		22.8
(-1) 		26.9
(0.1) 		28.1
(0.5) 		15.5
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182756_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4930
Sequence Type Exemplar sequence
Representative Public ID T07F8.2 NCBI
Target Description T07F8.2 /REP_DB=WormBase Gene ID /WP=CE01390 /TR=P91439 /GB=AAB38097.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063080(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063080 NCBI Caenorhabditis elegans T07F8.2 (T07F8.2) mRNA, complete cds. 11/11 None
SNAP00000013179 ENSEMBL cdna:SNAP chromosome:CEL140:II:7144550:7147184:1 9/11 None
GENEFINDER00000013182 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7144550:7147184:1 9/11 None
T07F8.2 ENSEMBL cdna:known chromosome:CEL140:II:7143992:7148385:1 gene:T07F8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7143987-7148381(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07F8.2
Entrez Gene 188235 Entrez gene
SwissProt P91439 EMBL-EBI
WormBase CE01390 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB38097 Hypothetical protein T07F8.2 [Caenorhabditis elegans] ref|NP_495481.1| T07F8.2 [Caenorhabditis elegans] 0.0
blast CAE67549 Hypothetical protein CBG13074 [Caenorhabditis briggsae] 0.0
blast AAB38097 Hypothetical protein T07F8.2 [Caenorhabditis elegans] ref|NP_495481.1| T07F8.2 [Caenorhabditis elegans] 1.0E-173
blast CAE67549 Hypothetical protein CBG13074 [Caenorhabditis briggsae] 1.0E-153
blast AAA81482 Hypothetical protein F42C5.2 [Caenorhabditis elegans] ref|NP_501164.1| F42C5.2 [Caenorhabditis elegans] 6.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495481.1 7 25-47,68-90,105-124,145-167,193-215,251-273,300-322
T07F8.2 7 25-47,68-90,105-124,145-167,193-215,251-273,300-322
SNAP00000013179 7 10-29,50-72,87-106,127-149,175-197,233-255,282-304
GENEFINDER00000013182 7 10-29,50-72,87-106,127-149,175-197,233-255,282-304
Sequence
Target Sequence 
>C. ELEGANS:182756_AT
gagtggcttcttatctaacagcagtcgcatttctagtcgatttaacaattatttcgttga
attattcacaaattgtccgacatgttagaagaaaatttacaaagcgaagagctagagtcc
aagccaactctcgagtacgtgaatcacttgtgaatgagccccgttatatgagagaaatga
cagctgcaattgttcgtgttggagtattccacgtcgtttgttggcttccaatgtctctga
tgcagtttatccccgataatacaattcaatcggaactcacagctggaatcaggttattca
gtaatttccgtgactatagtataactcgttggctaatctttattgccacatggcttacat
ccatgaatgcagctggagattggattttctacgcggtcatgaacagagaccttcgaaatc
ttattagtgccgtagctaaattcatatattttcaaagtagtgcaataggtgaaaaaaaga
tcagttcaagcagagcgggttccagtaacatcaagaatccactccaaaggacgatattct
tttgcttcattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGGCTTCTTATCTAACAGCAGT 58 403 581 Antisense
ACAGCAGTCGCATTTCTAGTCGATT 427 109 598 Antisense
AGTCCAAGCCAACTCTCGAGTACGT 62 59 696 Antisense
GAATCACTTGTGAATGAGCCCCGTT 558 327 721 Antisense
GTATTCCACGTCGTTTGTTGGCTTC 637 451 784 Antisense
TGTCTCTGATGCAGTTTATCCCCGA 435 557 812 Antisense
ATCGGAACTCACAGCTGGAATCAGG 108 35 849 Antisense
GCTAATCTTTATTGCCACATGGCTT 107 303 912 Antisense
AGATTGGATTTTCTACGCGGTCATG 27 65 957 Antisense
AGCAGAGCGGGTTCCAGTAACATCA 627 77 1069 Antisense
GACGATATTCTTTTGCTTCATTCCA 322 379 1110 Antisense
Sequence Source Affymetrix Proprietary Database