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[182755_at]

Description F47F6.3 /REP_DB=WormBase Gene ID /WP=CE10708 /TR=P91310 /GB=AAC71112.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 49      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 17.8
(-2.7)
A 		179.8
(2.4)
A 		198.6
(3)
A 		7.9
(-3)
A 		191
B 8.3
(-3)
A 		205.3
(3)
A 		206.5
(3)
A 		34.7
(-2.2)
A 		198
C 8.1
(-3)
A 		275.7
(3)
A 		157.5
(0.3)
A 		10.3
(-3)
A 		268
avr 11.4
(-3) 		220.3
(3) 		187.5
(2.1) 		17.6
(-2.8) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 12.9
(-2.8)
A 		144.4
(3)
A 		17.6
(-2.6)
A 		13.1
(-2.8)
A 		51.1
(-1.1)
A 		9.1
(-3)
A 		135
B 17.1
(-3)
A 		158
(3)
A 		77.5
(-0.4)
A 		16.7
(-3)
A 		32.2
(-2.3)
A 		35
(-2.2)
A 		141
C 11
(-3)
A 		184.9
(3)
A 		63.4
(-1.2)
A 		39.6
(-2)
A 		35.8
(-2.1)
A 		41.9
(-1.9)
A 		174
avr 13.7
(-3) 		162.4
(3) 		52.8
(-1.4) 		23.1
(-2.6) 		39.7
(-2) 		28.7
(-2.4) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 6.5
(-2.4)
A 		39
(1.5)
A 		51.9
(3)
A 		1.2
(-3)
A 		51
B 2.7
(-3)
A 		50.7
(3)
A 		47.8
(2.6)
A 		7.4
(-2.4)
A 		48
C 2.7
(-2.9)
A 		79.3
(3)
A 		54.9
(1.1)
A 		1.7
(-3)
A 		78
avr 4
(-2.9) 		56.3
(3) 		51.5
(2.5) 		3.4
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 2.4
(-3)
A 		51.3
(3)
A 		3.8
(-2.8)
A 		3.3
(-2.9)
A 		15.4
(-1.4)
A 		2.2
(-3)
A 		49
B 5.9
(-2.8)
A 		52.6
(3)
A 		18.8
(-1.2)
A 		4.4
(-3)
A 		13.1
(-1.9)
A 		13.1
(-1.9)
A 		48
C 4.1
(-3)
A 		56.4
(3)
A 		16.1
(-1.6)
A 		8
(-2.6)
A 		11.6
(-2.1)
A 		14
(-1.9)
A 		52
avr 4.1
(-3) 		53.4
(3) 		12.9
(-1.9) 		5.2
(-2.9) 		13.4
(-1.9) 		9.8
(-2.3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182755_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4773
Sequence Type Exemplar sequence
Representative Public ID F47F6.3 NCBI
Target Description F47F6.3 /REP_DB=WormBase Gene ID /WP=CE10708 /TR=P91310 /GB=AAC71112.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061534(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061534 NCBI Caenorhabditis elegans F47F6.3 (F47F6.3) mRNA, complete cds. 11/11 None
F47F6.3 ENSEMBL cdna:known chromosome:CEL140:II:1263075:1265751:-1 gene:F47F6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1263073-1265750(-) 96.84 100.0
Public Domain and Genome References
Gene Title
Ensembl F47F6.3
Entrez Gene 185942 Entrez gene
WormBase CE35937 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_493935 F47F6.3 [Caenorhabditis elegans] 0.0
blast AAC71112 Hypothetical protein F47F6.3 [Caenorhabditis elegans] 0.0
blast AAW88418 Hypothetical protein C02A12.8 [Caenorhabditis elegans] ref|NP_001021360.1| C02A12.8 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.3E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493935.2 5 21-43,94-116,164-186,201-220,389-411
F47F6.3 5 21-43,94-116,164-186,201-220,389-411
Sequence
Target Sequence 
>C. ELEGANS:182755_AT
tacgctatatgcggactcctacgactctagcaatgctctgaaaactttcaaaagccacgt
ggctcggcacaagccagatgtgctctttatcattgcgaaatactcccgatctctgaaagc
ccttattcaggctaacgataccttgttgaatcagatctcggaaaatattgaattttatga
acgccacgcccggaaagtgtacattctgggggcccttccaacttattcagcaaacttttt
gaatgtattcctgcagaatgtgatgcgaaatccagaggatatggaaaaattacatttgaa
tcgcaaaaaagcggacgaggatgtaaaaaatgtaaagaaaagattcgaaatcgcggggag
acaatgcaaaaagtgccgggtaatttttaggttggcttacaccattttaagggattcatt
tcagtttatcgatctaaatcctgcatttttggagagggaaaagtatctaacatttgatcg
gacctctttgttttcttatcatgacaatactgggcatctgctgccggcgggtgtaaagct
ctgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGCTATATGCGGACTCCTACGAC 398 649 1005 Antisense
TCCTACGACTCTAGCAATGCTCTGA 161 593 1021 Antisense
CACGTGGCTCGGCACAAGCCAGATG 629 197 1060 Antisense
CCAGATGTGCTCTTTATCATTGCGA 655 271 1078 Antisense
ATCATTGCGAAATACTCCCGATCTC 373 31 1093 Antisense
ACGCCACGCCCGGAAAGTGTACATT 424 89 1185 Antisense
GCCCTTCCAACTTATTCAGCAAACT 334 287 1216 Antisense
TCTAACATTTGATCGGACCTCTTTG 153 601 1470 Antisense
GGACCTCTTTGTTTTCTTATCATGA 338 523 1484 Antisense
GACAATACTGGGCATCTGCTGCCGG 164 365 1507 Antisense
TGCCGGCGGGTGTAAAGCTCTGTGA 383 583 1526 Antisense
Sequence Source Affymetrix Proprietary Database