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[182754_at]

Description C16B8.3 /REP_DB=WormBase Gene ID /WP=CE04013 /TR=Q18043 /GB=AAA82620.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 04      6grp_total > 07      4grp_total > 10      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4342
1 2 3 4 range
A 3795.8
(-3)
P 		5372.1
(-0.8)
P 		4426
(-2.1)
P 		8091.7
(3)
P 		4296
B 4177.5
(-3)
P 		4580.6
(-2.4)
P 		4516.4
(-2.5)
P 		8138
(3)
P 		3961
C 3876.1
(-3)
P 		4093.8
(-2.7)
P 		3975.9
(-2.8)
P 		7825.7
(3)
P 		3950
avr 3949.8
(-3) 		4682.2
(-1.9) 		4306.1
(-2.5) 		8018.5
(3) 		4069

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3902
1 2 3 4 5 6 range
A 6298.2
(3)
P 		4234.7
(-1)
P 		4180.4
(-1.1)
P 		3667.5
(-2.1)
P 		3212.4
(-3)
P 		4237.9
(-1)
P 		3086
B 5293.7
(3)
P 		4001.1
(0.3)
P 		4439.1
(1.2)
P 		3449.2
(-0.9)
P 		2427.8
(-3)
P 		2815.6
(-2.2)
P 		2866
C 5287.5
(3)
P 		3456.5
(-0.8)
P 		5097.2
(2.6)
P 		3486
(-0.7)
P 		3609
(-0.5)
P 		2396.1
(-3)
P 		2891
avr 5626.5
(3) 		3897.4
(-1.1) 		4572.2
(0.5) 		3534.2
(-1.9) 		3083.1
(-3) 		3149.9
(-2.8) 		2543
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 688
1 2 3 4 range
A 1382
(3)
P 		1166.1
(-2.8)
P 		1157
(-3)
P 		1184.5
(-2.3)
P 		225
B 1332.2
(-0.5)
P 		1131.3
(-2.3)
P 		1046.5
(-3)
P 		1734.2
(3)
P 		688
C 1283.1
(0.1)
P 		1177
(-3)
P 		1385.7
(3)
P 		1319.5
(1.1)
P 		209
avr 1332.4
(1.1) 		1158.1
(-3) 		1196.4
(-2.1) 		1412.7
(3) 		255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1259
1 2 3 4 5 6 range
A 1161
(-0.5)
P 		1506.1
(3)
P 		910.4
(-3)
P 		930.2
(-2.8)
P 		969.4
(-2.4)
P 		1031.8
(-1.8)
P 		596
B 1841.9
(3)
P 		1331.8
(-0.3)
P 		1078
(-1.9)
P 		913.6
(-3)
P 		986.4
(-2.5)
P 		1049.9
(-2.1)
P 		928
C 1959.9
(3)
P 		1054.7
(-1.3)
P 		1297.3
(-0.2)
P 		701
(-3)
P 		1167.8
(-0.8)
P 		802.1
(-2.5)
P 		1259
avr 1654.3
(3) 		1297.5
(0.3) 		1095.2
(-1.2) 		848.3
(-3) 		1041.2
(-1.6) 		961.3
(-2.2) 		806
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18551
Sequence Type Exemplar sequence
Representative Public ID C16B8.3 NCBI
Target Description C16B8.3 /REP_DB=WormBase Gene ID /WP=CE04013 /TR=Q18043 /GB=AAA82620.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076285(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076285 NCBI Caenorhabditis elegans C16B8.3 (C16B8.3) mRNA, complete cds. 11/11 None
SNAP00000002086 ENSEMBL cdna:SNAP chromosome:CEL140:X:3968118:3968612:-1 11/11 None
GENEFINDER00000002090 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3968118:3968612:-1 11/11 None
C16B8.3.2 ENSEMBL cdna:known chromosome:CEL140:X:3968014:3968612:-1 gene:C16B8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3968118-3968613(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16B8.3
Entrez Gene 180681 Entrez gene
SwissProt Q18043 EMBL-EBI
WormBase CE04013 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82620 Hypothetical protein C16B8.3 [Caenorhabditis elegans] ref|NP_508686.1| C16B8.3 [Caenorhabditis elegans] 6.0E-25
Sequence
Target Sequence 
>C. ELEGANS:182754_AT
aagttcttcctctagtgacggttcttatcgttccccagttggcttcggtgttactccaat
tatgcctcttccatatggagcccctccaccaccagttggcgccggagttggatatgctcc
accgccaccaagaccttacggagccacatatgcacccccaccacctatgggaatcggtgc
tggagtgaatcctagtggatatgtccaacaagccccaccactcccaacccaaggatactc
ggcgtacaaccaacaaccacctccacttccacagcaaccctatcaaactaacatgtatcc
aagcaacccaggatactcaagcacaccaggctatccacaacagcagccatatcaaattgg
aaccggagccacgccagccggtatgtacccaccaccaccaacagggcaatatcctccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTCTTCCTCTAGTGACGGTTCT 16 157 48 Antisense
GGCTTCGGTGTTACTCCAATTATGC 347 537 88 Antisense
ATTATGCCTCTTCCATATGGAGCCC 541 11 106 Antisense
AGTTGGCGCCGGAGTTGGATATGCT 673 61 141 Antisense
AGACCTTACGGAGCCACATATGCAC 664 69 178 Antisense
GTGGATATGTCCAACAAGCCCCACC 583 489 242 Antisense
ATACTCGGCGTACAACCAACAACCA 10 3 282 Antisense
TTCCACAGCAACCCTATCAAACTAA 211 701 314 Antisense
TACTCAAGCACACCAGGCTATCCAC 396 643 361 Antisense
CTATCCACAACAGCAGCCATATCAA 272 225 378 Antisense
CCACCAACAGGGCAATATCCTCCAC 299 273 442 Antisense
Sequence Source Affymetrix Proprietary Database