[Home] | [Total List]

[182752_s_at]

Description Y43F8C.7 /REP_DB=WormBase Gene ID /WP=CE21905 /TR=Q9XWP1 /GB=CAA21610.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 85      6grp_total > 76      4grp_total > 61      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 854
1 2 3 4 range
A 1277.1
(3)
P 		940.3
(-0.1)
P 		1084.3
(1.2)
P 		624.5
(-3)
P 		653
B 1291.5
(1.4)
P 		1439.6
(3)
P 		1280.1
(1.3)
P 		882.5
(-3)
P 		557
C 1404.1
(3)
P 		1150
(1.1)
P 		1060.4
(0.5)
P 		585.4
(-3)
P 		819
avr 1324.2
(3) 		1176.6
(1.6) 		1141.6
(1.3) 		697.5
(-3) 		627

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 822
1 2 3 4 5 6 range
A 471
(-3)
P 		882
(2.1)
P 		951.7
(3)
P 		745.2
(0.4)
P 		769
(0.7)
P 		781.8
(0.9)
P 		481
B 684.6
(0.2)
P 		497.3
(-3)
P 		540.8
(-2.3)
P 		790.1
(2)
P 		846.2
(3)
P 		846.3
(3)
P 		349
C 864.6
(-0.2)
P 		499.6
(-3)
P 		888.3
(-0.1)
P 		655.8
(-1.8)
P 		720.5
(-1.3)
P 		1293.4
(3)
P 		794
avr 673.4
(-2.2) 		626.3
(-3) 		793.6
(-0.1) 		730.4
(-1.2) 		778.6
(-0.4) 		973.8
(3) 		348
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 374
1 2 3 4 range
A 465
(3)
P 		204.1
(-1.2)
P 		283.5
(0.1)
P 		91.4
(-3)
P 		374
B 411.9
(3)
P 		355.5
(1.5)
P 		296.6
(-0.1)
P 		188.1
(-3)
P 		224
C 464.8
(3)
P 		330.6
(0.8)
P 		369.6
(1.4)
P 		98.7
(-3)
P 		366
avr 447.2
(3) 		296.7
(0.2) 		316.6
(0.6) 		126.1
(-3) 		321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 346
1 2 3 4 5 6 range
A 86.8
(-3)
P 		313.7
(3)
P 		207.3
(0.2)
P 		189
(-0.3)
P 		232
(0.8)
P 		190.4
(-0.3)
P 		227
B 238.2
(0)
P 		165.5
(-2)
P 		131.3
(-3)
P 		209.3
(-0.8)
P 		343.8
(3)
P 		315.6
(2.2)
P 		213
C 320.5
(0.8)
P 		152.4
(-2.6)
P 		226.1
(-1.1)
P 		131.9
(-3)
P 		233.1
(-1)
P 		433
(3)
P 		301
avr 215.2
(-1.3) 		210.5
(-1.5) 		188.2
(-2.5) 		176.7
(-3) 		269.6
(1.1) 		313
(3) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182752_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13739
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.7 NCBI
Target Description Y43F8C.7 /REP_DB=WormBase Gene ID /WP=CE21905 /TR=Q9XWP1 /GB=CAA21610.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075406 NCBI Caenorhabditis elegans Y43F8C.7 (Y43F8C.7) mRNA, complete cds. 11/11 None
SNAP00000039610 ENSEMBL cdna:SNAP chromosome:CEL140:V:19627164:19646601:-1 9/11 None
GENEFINDER00000039634 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19644057:19646601:-1 11/11 None
Y43F8C.7 ENSEMBL cdna:known chromosome:CEL140:V:19643990:19646602:-1 gene:Y43F8C.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19644056-19646601(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8C.7
Entrez Gene 180286 Entrez gene
SwissProt Q9XWP1 EMBL-EBI
WormBase CE21905 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21610 Hypothetical protein Y43F8C.7 [Caenorhabditis elegans] ref|NP_507807.1| Y43F8C.7 [Caenorhabditis elegans] 1.0E-126
blast CAA21620 Hypothetical protein Y43F8C.6 [Caenorhabditis elegans] ref|NP_507806.2| Y43F8C.6 [Caenorhabditis elegans] 1.0E-123
blast CAA21609 Hypothetical protein Y43F8C.5 [Caenorhabditis elegans] ref|NP_507805.1| Y43F8C.5 [Caenorhabditis elegans] 1.0E-115
blast CAA21610 Hypothetical protein Y43F8C.7 [Caenorhabditis elegans] ref|NP_507807.1| Y43F8C.7 [Caenorhabditis elegans] 1.0E-109
blast CAE61743 Hypothetical protein CBG05695 [Caenorhabditis briggsae] 4.0E-94
blast AAT94433 RE66462p [Drosophila melanogaster] 4.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000039610 1 583-605
Sequence
Target Sequence 
>C. ELEGANS:182752_S_AT
gagccgcgcattcgacggaaactacacgggaaccttcaaaccggctcaggagcaaaattt
cgggcaaaagcttttcgaagctcaaaatggcgtttattcggttcgagcacggtcgagcac
acaacccggacagaatttcctgacgactagcgatccgtgcctctttctccactccaacct
attccacgtcttctggctgtcaatttctcaagaaaaacagcaacttcacacgctgacaat
tttcccggatacagtcgcctggcgtagtgacaccgaagacggaaaatatcattccgaggc
gaaattgtgcaaagatcgtagtgcaaatgtgctccaatcgacacaaggaacaccgaaagg
agtatgccacgttgttggcgaatctgtacttccgacacccgatacggcggcttttgtaca
gaaaatggaacgggagaaacgcgcgaaacagcacggagctgatgcggataatcggagctt
tttggctaaatattggatgtacattgttccagtggtccttttcgccgtcatttcgagtgc
ag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCGCGCATTCGACGGAAACTAC 638 383 144 Antisense
GCGTTTATTCGGTTCGAGCACGGTC 83 291 233 Antisense
GAATTTCCTGACGACTAGCGATCCG 216 325 276 Antisense
TTCACACGCTGACAATTTTCCCGGA 554 659 368 Antisense
CAATTTTCCCGGATACAGTCGCCTG 334 179 380 Antisense
TCGCCTGGCGTAGTGACACCGAAGA 414 599 398 Antisense
TGTTGGCGAATCTGTACTTCCGACA 547 563 516 Antisense
CACCCGATACGGCGGCTTTTGTACA 25 89 539 Antisense
GAAACGCGCGAAACAGCACGGAGCT 662 357 579 Antisense
GATGTACATTGTTCCAGTGGTCCTT 98 407 639 Antisense
CTTTTCGCCGTCATTTCGAGTGCAG 563 221 661 Antisense
Sequence Source Affymetrix Proprietary Database