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[182751_at]

Description C16D9.5 /REP_DB=WormBase Gene ID /WP=CE06841 /TR=Q22899 /GB=AAB18283.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 46      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 86.8
(3)
P 		36.9
(-0.7)
A 		25.3
(-1.5)
A 		5.7
(-3)
A 		81
B 70.4
(3)
P 		40.5
(-0.1)
A 		13.2
(-3)
A 		17.1
(-2.6)
A 		57
C 99.2
(3)
P 		35.1
(-1.9)
A 		34.6
(-1.9)
A 		20.7
(-3)
A 		79
avr 85.5
(3) 		37.5
(-1.1) 		24.4
(-2.2) 		14.5
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 4.2
(-3)
A 		45.1
(1.3)
A 		61.3
(3)
P 		40
(0.8)
A 		34.6
(0.2)
A 		4
(-3)
A 		57
B 34.6
(-1.9)
A 		77.8
(3)
P 		62.3
(1.3)
P 		48.3
(-0.3)
P 		53.4
(0.3)
P 		24.4
(-3)
P 		53
C 3.5
(-3)
A 		61.9
(3)
P 		34.6
(0.2)
A 		5.7
(-2.8)
A 		26.4
(-0.6)
A 		35.1
(0.2)
A 		58
avr 14.1
(-3) 		61.6
(3) 		52.7
(1.9) 		31.3
(-0.8) 		38.1
(0) 		21.2
(-2.1) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 31.6
(3)
P 		8
(-1.6)
A 		6.6
(-1.9)
A 		0.8
(-3)
A 		31
B 22.5
(3)
P 		10
(-0.9)
A 		3.1
(-3)
A 		3.6
(-2.8)
A 		19
C 32.8
(3)
P 		10.1
(-1.6)
A 		12.1
(-1.2)
A 		3.5
(-3)
A 		29
avr 29
(3) 		9.4
(-1.5) 		7.3
(-1.9) 		2.6
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 0.8
(-3)
A 		16.1
(3)
A 		13.4
(1.9)
P 		10.2
(0.7)
A 		10.4
(0.8)
A 		1
(-2.9)
A 		15
B 12
(-2)
A 		25.9
(3)
P 		15.1
(-0.9)
P 		12.8
(-1.7)
P 		21.7
(1.5)
P 		9.1
(-3)
P 		17
C 1.3
(-3)
A 		18.9
(3)
P 		8.8
(-0.4)
A 		1.2
(-3)
A 		8.5
(-0.5)
A 		11.7
(0.6)
A 		18
avr 4.7
(-3) 		20.3
(3) 		12.4
(-0) 		8.1
(-1.7) 		13.5
(0.4) 		7.3
(-2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12326
Sequence Type Exemplar sequence
Representative Public ID C16D9.5 NCBI
Target Description C16D9.5 /REP_DB=WormBase Gene ID /WP=CE06841 /TR=Q22899 /GB=AAB18283.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072724 NCBI Caenorhabditis elegans C16D9.5 (C16D9.5) mRNA, complete cds. 11/11 None
GENEFINDER00000043390 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8246360:8247831:-1 11/11 None
C16D9.5 ENSEMBL cdna:known chromosome:CEL140:V:8246360:8247831:-1 gene:C16D9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043377 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8246360-8247832(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16D9.5
Entrez Gene 182686 Entrez gene
SwissProt Q22899 EMBL-EBI
WormBase CE35239 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB18283 Hypothetical protein C16D9.5 [Caenorhabditis elegans] ref|NP_505125.2| C16D9.5 [Caenorhabditis elegans] 0.0
blast NP_494329 F22E5.1 [Caenorhabditis elegans] gb|AAB66167.1| Hypothetical protein F22E5.1 [Caenorhabditis elegans] 1.0E-127
blast AAB18284 Hypothetical protein C16D9.4 [Caenorhabditis elegans] ref|NP_505124.1| C16D9.4 [Caenorhabditis elegans] 1.0E-122
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505125.2 1 7-26
C16D9.5 1 7-26
GENEFINDER00000043390 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:182751_AT
atctcgaagttcgtgttttcaatacaagtggatatccaaattatacaaatcattggatgg
agtatcgatttaagccattgattctagcagaagttatgaaagattatgaaaatatatggt
ggatggatgcacatatttcagtgaagaaacctggtatgattgagaatttattcaaggaaa
tttcagaaaatacaaagaaatcagttactaaagttcctatttcaatttactattttattc
attccagtcacagtaactttgcgactttgttcacagatttgttagattacttcccatcaa
attcgattcctctattaaaagatcccaatcttggtggtcagatgggtgccaatacaatgt
ttttttcaaggactgagtatacaattcagactttcaaatggtggatcctctgcgcacttg
acaagaattgtatgaatcccccaggtgctcaagtgtattgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCGAAGTTCGTGTTTTCAATAC 54 33 566 Antisense
GATTTAAGCCATTGATTCTAGCAGA 137 429 632 Antisense
TTACTATTTTATTCATTCCAGTCAC 553 683 792 Antisense
CATTCCAGTCACAGTAACTTTGCGA 488 215 805 Antisense
AGTAACTTTGCGACTTTGTTCACAG 487 61 817 Antisense
GATTTGTTAGATTACTTCCCATCAA 466 427 841 Antisense
TCCCATCAAATTCGATTCCTCTATT 446 597 857 Antisense
AATCTTGGTGGTCAGATGGGTGCCA 42 169 892 Antisense
TTCAAATGGTGGATCCTCTGCGCAC 126 687 958 Antisense
CAAGAATTGTATGAATCCCCCAGGT 427 185 987 Antisense
CCCCCAGGTGCTCAAGTGTATTGTA 574 261 1003 Antisense
Sequence Source Affymetrix Proprietary Database