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[182750_at]

Description C45H4.3 /REP_DB=WormBase Gene ID /WP=CE08737 /TR=O44703 /GB=AAC25870.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 18      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 17.9
(0.8)
A 		7.7
(-3)
A 		23
(2.6)
A 		24
(3)
A 		16
B 18.8
(-2.8)
A 		17.6
(-3)
A 		20.6
(-2.6)
A 		58.5
(3)
A 		41
C 15.7
(-3)
A 		60.9
(-0.4)
A 		19.1
(-2.8)
A 		120.1
(3)
A 		104
avr 17.5
(-3) 		28.7
(-1.7) 		20.9
(-2.6) 		67.5
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 81.9
(3)
A 		20
(-2.1)
A 		60.2
(1.2)
A 		16.5
(-2.4)
A 		16.8
(-2.4)
A 		9.4
(-3)
A 		73
B 17.2
(3)
A 		12.6
(-0.8)
A 		11.6
(-1.6)
A 		12.4
(-0.9)
A 		10.9
(-2.2)
A 		9.9
(-3)
A 		7
C 17.9
(1.6)
A 		14.8
(0.6)
A 		21.9
(3)
A 		4.4
(-3)
A 		12.5
(-0.2)
A 		5.7
(-2.6)
A 		18
avr 39
(3) 		15.8
(-1.5) 		31.2
(1.5) 		11.1
(-2.5) 		13.4
(-2) 		8.3
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 6.5
(3)
A 		1.7
(-3)
A 		6
(2.4)
A 		3.5
(-0.8)
A 		5
B 6
(-1.8)
A 		4.3
(-3)
A 		4.8
(-2.6)
A 		12.5
(3)
A 		8
C 5.2
(-3)
A 		17.5
(1.9)
A 		6.7
(-2.4)
A 		20.2
(3)
A 		15
avr 5.9
(-2.9) 		7.8
(-1.1) 		5.8
(-3) 		12.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 15.1
(3)
A 		7.1
(-0.8)
A 		13.1
(2.1)
A 		4.2
(-2.1)
A 		5.1
(-1.7)
A 		2.3
(-3)
A 		13
B 6
(3)
A 		4.2
(-0.4)
A 		2.8
(-3)
A 		3.3
(-2.1)
A 		4.4
(0)
A 		3.7
(-1.3)
A 		3
C 6.6
(3)
A 		4.5
(0.8)
A 		5.6
(1.9)
A 		0.9
(-3)
A 		4
(0.3)
A 		1.9
(-1.9)
A 		6
avr 9.2
(3) 		5.3
(-0.5) 		7.2
(1.2) 		2.8
(-2.8) 		4.5
(-1.3) 		2.6
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182750_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15921
Sequence Type Exemplar sequence
Representative Public ID C45H4.3 NCBI
Target Description C45H4.3 /REP_DB=WormBase Gene ID /WP=CE08737 /TR=O44703 /GB=AAC25870.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071190 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-17) (srbc-17) mRNA, complete cds. 11/11 None
GENEFINDER00000009355 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2175505:2179070:1 9/11 None
C45H4.3 ENSEMBL cdna:known chromosome:CEL140:V:2177542:2178944:1 gene:C45H4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2175369-2178944(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-17
Ensembl C45H4.3
Entrez Gene 183485 Entrez gene
SwissProt Q5F4U4 EMBL-EBI
WormBase CE38048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32727 hypothetical protein C45H4.3 - Caenorhabditis elegans 0.0
blast AAW88408 Serpentine receptor, class bc (class b-like) protein 17 [Caenorhabditis elegans] ref|NP_503591.2| Serpentine Receptor, class BC (class B-like) family member (srbc-17) [Caenorhabditis elegans] 1.0E-143
blast T32727 hypothetical protein C45H4.3 - Caenorhabditis elegans 1.0E-124
blast AAW88407 Hypothetical protein C45H4.18 [Caenorhabditis elegans] ref|NP_001023710.1| C45H4.18 [Caenorhabditis elegans] 1.0E-124
blast AAC25882 Serpentine receptor, class bc (class b-like) protein 16 [Caenorhabditis elegans] ref|NP_503593.2| Serpentine Receptor, class BC (class B-like) family member (srbc-16) [Caenorhabditis elegans] 1.0E-107
blast AAW88408 Serpentine receptor, class bc (class b-like) protein 17 [Caenorhabditis elegans] ref|NP_503591.2| Serpentine Receptor, class BC (class B-like) family member (srbc-17) [Caenorhabditis elegans] 4.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.2E-107
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.0E-89
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503591.2 7 4-26,46-68,78-100,120-142,176-195,216-238,243-265
C45H4.3 7 4-26,46-68,78-100,120-142,176-195,216-238,243-265
GENEFINDER00000009355 8 21-43,70-92,105-127,147-169,279-301,311-333,353-375,409-428
Sequence
Target Sequence 
>C. ELEGANS:182750_AT
atcttgtacctatcactgttttcctggaatatcggatccgcaagatcagtgaccgttttg
gcaatttctgtggaaagggtagtggccgtctttgcgcctatatcgtatcacaactaccgg
ccgtattttccaacgtttttgattcccattgctgcgatcagttttggagcatctgacata
ttcattctcttcggaatctgtgagtacgagatcgacgttccggaagggtgtgctgctctg
ggatgttgcattaatgcatgttttactaaatattatagcattaataaagggataacctac
atatcaactttcacattcactctactactatccactaaactactttatctcaaaaactac
aacgctgaaaagaaaagcttatccagggcgaatatcttaacccttatcgacgccgccaac
gtgattatttttgatttttcaccagttttgatatcatttctgttccagcagtggttttca
ctacaagatttcggacccatcggggtggtgtcaaaaatgtggggctgtgctacagaggcc
ctactggtttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTGTACCTATCACTGTTTTCCT 58 29 1090 Antisense
TATCACAACTACCGGCCGTATTTTC 18 659 1195 Antisense
CAACGTTTTTGATTCCCATTGCTGC 5 189 1220 Antisense
GCATCTGACATATTCATTCTCTTCG 524 309 1258 Antisense
GATCGACGTTCCGGAAGGGTGTGCT 546 401 1299 Antisense
GTGTGCTGCTCTGGGATGTTGCATT 156 487 1317 Antisense
ATATCAACTTTCACATTCACTCTAC 290 19 1390 Antisense
TTCACTCTACTACTATCCACTAAAC 275 687 1405 Antisense
TCGACGCCGCCAACGTGATTATTTT 113 603 1496 Antisense
ACAAGATTTCGGACCCATCGGGGTG 493 111 1572 Antisense
GCTACAGAGGCCCTACTGGTTTTTG 159 301 1618 Antisense
Sequence Source Affymetrix Proprietary Database