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[182749_at]

Description C09B9.7 /REP_DB=WormBase Gene ID /WP=CE06799 /TR=P90742 /GB=AAB37561.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 39.3
(-1.8)
A 		45.5
(-0.6)
A 		65
(3)
A 		32.9
(-3)
A 		32
B 52.4
(1.9)
A 		46.4
(-0.5)
A 		40.2
(-3)
A 		55.1
(3)
P 		15
C 44.8
(-2.2)
A 		83.4
(-0.2)
A 		30
(-3)
A 		143.6
(3)
M 		114
avr 45.5
(-2.9) 		58.4
(-0.5) 		45.1
(-3) 		77.2
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 11
(-3)
A 		45.2
(1.5)
M 		47.5
(1.9)
P 		56.1
(3)
A 		50.5
(2.3)
A 		51.7
(2.4)
P 		45
B 50.4
(2)
M 		36.9
(0.3)
A 		59.1
(3)
A 		9
(-3)
A 		33.7
(-0)
A 		54.7
(2.5)
A 		50
C 53.3
(0.6)
A 		62.6
(3)
P 		55.6
(1.2)
A 		39.1
(-3)
A 		46.7
(-1.1)
A 		45.1
(-1.5)
A 		24
avr 38.2
(-1.9) 		48.2
(1.2) 		54.1
(3) 		34.7
(-3) 		43.6
(-0.2) 		50.5
(1.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 14.3
(1.7)
A 		9.9
(-0.5)
A 		17
(3)
A 		4.8
(-3)
A 		12
B 16.7
(3)
A 		11.5
(-1.2)
A 		9.3
(-3)
A 		11.7
(-1.1)
P 		7
C 14.8
(-1.1)
A 		24
(2.9)
A 		10.5
(-3)
A 		24.2
(3)
M 		14
avr 15.3
(3) 		15.1
(2.6) 		12.3
(-3) 		13.6
(-0.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2
(-3)
A 		16.1
(3)
M 		10.3
(0.5)
P 		14.2
(2.2)
A 		15.2
(2.6)
A 		12.6
(1.5)
P 		14
B 17.5
(2)
M 		12.3
(0.3)
A 		14.3
(1)
A 		2.4
(-3)
A 		13.7
(0.8)
A 		20.4
(3)
A 		18
C 19.8
(3)
A 		19.1
(2.6)
P 		14.2
(0.2)
A 		7.9
(-3)
A 		15.1
(0.6)
A 		15.1
(0.6)
A 		12
avr 13.1
(0.8) 		15.8
(2.8) 		12.9
(0.6) 		8.2
(-3) 		14.7
(2) 		16
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182749_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10400
Sequence Type Exemplar sequence
Representative Public ID C09B9.7 NCBI
Target Description C09B9.7 /REP_DB=WormBase Gene ID /WP=CE06799 /TR=P90742 /GB=AAB37561.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068311(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068311 NCBI Caenorhabditis elegans C09B9.7 (C09B9.7) mRNA, complete cds. 11/11 None
SNAP00000029403 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5056987:5060852:-1 11/11 None
GENEFINDER00000029412 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5057067:5060852:-1 11/11 None
C09B9.7 ENSEMBL cdna:known chromosome:CEL140:IV:5056963:5059841:-1 gene:C09B9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5056968-5059847(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09B9.7
Entrez Gene 177273 Entrez gene
SwissProt P90742 EMBL-EBI
WormBase CE06799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37561 Hypothetical protein C09B9.7 [Caenorhabditis elegans] ref|NP_500712.1| C09B9.7 [Caenorhabditis elegans] 0.0
blast AAB37736 Hypothetical protein C01G5.4 [Caenorhabditis elegans] ref|NP_500995.1| C01G5.4 [Caenorhabditis elegans] 1.0E-170
blast AAB37736 Hypothetical protein C01G5.4 [Caenorhabditis elegans] ref|NP_500995.1| C01G5.4 [Caenorhabditis elegans] 1.0E-160
blast CAA22059 Hypothetical protein Y113G7C.1 [Caenorhabditis elegans] ref|NP_507918.1| Y113G7C.1 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 9.8E-6
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.9E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500712.1 1 760-782
C09B9.7 1 760-782
SNAP00000029403 1 885-907
GENEFINDER00000029412 1 885-907
Sequence
Target Sequence 
>C. ELEGANS:182749_AT
aattcgcgaagcgtgctgctcatttcaaagaagctccgatagcattccagtcgttccaca
aggttttgagacaattcgttgcaactcaagagaagagcagtaaaatcgttattagcggtt
cggaagattgcggaattacaatccttcatatcatcttatcaattgtgacaacgcttcttc
ttgctctgatcgcgttcattgcatacgtattctatcaaaagaagaaacaagacgcaaaat
caagagaattgagtattcgcagagatgagttcgaacaggaaatggctgataaaatcagaa
agcaattggaggagttagaaaggagggagaagaaaagcaagatgaacggagtcggaaaga
agcaggaaaagtcaggcccaatttcccagtacttcccagagaccatttcggatcccggaa
gtcttcctaaaaacggaactccaactgcatcaccgctgaaaactgaaaatggattgcgag
gcgttcgcagtgagtattttggtatcatgggaactggcacggctccggctgcaacaccat
cgaagtttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCGCGAAGCGTGCTGCTCATTT 673 177 2144 Antisense
AGAAGCTCCGATAGCATTCCAGTCG 603 73 2172 Antisense
ATTCCAGTCGTTCCACAAGGTTTTG 557 7 2187 Antisense
ATTACAATCCTTCATATCATCTTAT 276 13 2278 Antisense
CAATTGTGACAACGCTTCTTCTTGC 446 179 2303 Antisense
GCTCTGATCGCGTTCATTGCATACG 24 301 2326 Antisense
TTCCCAGAGACCATTTCGGATCCCG 698 697 2536 Antisense
AAACGGAACTCCAACTGCATCACCG 331 127 2574 Antisense
GAGGCGTTCGCAGTGAGTATTTTGG 55 407 2621 Antisense
GTATCATGGGAACTGGCACGGCTCC 45 455 2645 Antisense
CGGCTGCAACACCATCGAAGTTTGA 635 241 2669 Antisense
Sequence Source Affymetrix Proprietary Database