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[182748_at]

Description T05G11.6 /REP_DB=WormBase Gene ID /WP=CE18934 /TR=Q9XXJ7 /GB=CAA19433.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 33      6grp_cgc > 40      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 25
(-1.6)
A 		49.7
(2.6)
A 		52.3
(3)
A 		16.6
(-3)
A 		36
B 6.7
(-3)
A 		11.4
(-2.2)
A 		40.3
(3)
A 		11.5
(-2.1)
A 		34
C 11.8
(-3)
A 		42.5
(0.4)
A 		14.4
(-2.7)
A 		65.9
(3)
M 		54
avr 14.5
(-3) 		34.5
(2.7) 		35.7
(3) 		31.3
(1.8) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 33.2
(0.1)
A 		19.1
(-3)
A 		39.3
(1.5)
P 		46
(3)
P 		26.8
(-1.3)
A 		25.6
(-1.6)
A 		27
B 45.9
(3)
A 		36.9
(1.3)
A 		27.4
(-0.5)
A 		18.4
(-2.3)
A 		38.2
(1.5)
A 		14.6
(-3)
A 		31
C 40.5
(2.4)
A 		39.4
(2.2)
A 		16.9
(-1)
A 		44.7
(3)
A 		3.4
(-3)
A 		19.3
(-0.7)
A 		41
avr 39.9
(3) 		31.8
(0.6) 		27.9
(-0.6) 		36.4
(2) 		22.8
(-2.1) 		19.8
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.1
(0.6)
A 		10.8
(1.5)
A 		13.7
(3)
A 		2.4
(-3)
A 		11
B 2.1
(-3)
A 		2.8
(-2.4)
A 		9.3
(3)
A 		2.4
(-2.8)
A 		7
C 3.9
(-3)
A 		12.2
(3)
A 		5
(-2.2)
A 		11.1
(2.2)
M 		8
avr 5
(-3) 		8.6
(2) 		9.3
(3) 		5.3
(-2.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.1
(-3)
A 		6.8
(-2.3)
A 		8.6
(-0.3)
P 		11.7
(3)
P 		8.1
(-0.9)
A 		6.2
(-2.9)
A 		6
B 16
(3)
A 		12.3
(1)
A 		6.6
(-2.1)
A 		4.9
(-3)
A 		15.5
(2.7)
A 		5.4
(-2.7)
A 		11
C 15
(3)
A 		12
(1.7)
A 		4.3
(-1.6)
A 		9
(0.4)
A 		1.1
(-3)
A 		6.5
(-0.7)
A 		14
avr 12.4
(3) 		10.4
(1.1) 		6.5
(-2.5) 		8.5
(-0.7) 		8.2
(-0.9) 		6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182748_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12820
Sequence Type Exemplar sequence
Representative Public ID T05G11.6 NCBI
Target Description T05G11.6 /REP_DB=WormBase Gene ID /WP=CE18934 /TR=Q9XXJ7 /GB=CAA19433.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074592
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000043863 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15939777:15942937:-1 11/11 None
T05G11.8 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15939777:15941121:-1 gene:T05G11.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15939776-15942937(-) 100.0 100.0
Public Domain and Genome References
Ensembl T05G11.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19433 Hypothetical protein T05G11.6 [Caenorhabditis elegans] ref|NP_506993.2| Serpentine Receptor, class W family member (srw-55) [Caenorhabditis elegans] 0.0
blast CAB04370 Hypothetical protein F40D4.8 [Caenorhabditis elegans] ref|NP_507344.1| Serpentine Receptor, class W family member (srw-51) [Caenorhabditis elegans] 1.0E-96
blast CAA18357 Hypothetical protein H24D24.1 [Caenorhabditis elegans] ref|NP_506996.1| Serpentine Receptor, class W family member (srw-59) [Caenorhabditis elegans] 2.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.1E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043863 13 15-37,50-72,103-125,146-168,212-234,261-283,298-320,349-371,386-408,453-475,531-553,583-605,620-642
Sequence
Target Sequence 
>C. ELEGANS:182748_AT
tgtaccctacaaacgcaagcattcaaaattacacaacatggcatccggattctcctcgct
ttccttcaacaacggtatcggaagtctatgaaattcttccagaatgtgcaaattataccg
acaaacttacttacgaagcttattttactagtttcggcgaactgatctacaggatttctc
ttttaattgatggaatagttttcaaattgacaccatcaatacttctcccatttttcacaa
tagttctactctatgaaatgagaaaaatgagaaaagtggcagcagctcaatgttttcaaa
cttcaaaaagcaaagaccgatcaacaaagcttgtaacttttgtgacaatcacatttttaa
tatctaccgctccactgggaatattatatattgcagagtgtattgttctggaatcatttg
cgttattaaacttcttaggcaaactcaagtctatattcgtcctaatatcgataatcaatg
gaactttacactttctcatttgcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACCCTACAAACGCAAGCATTCA 153 559 1421 Antisense
TACACAACATGGCATCCGGATTCTC 634 641 1450 Antisense
CTCGCTTTCCTTCAACAACGGTATC 648 223 1475 Antisense
GAACTGATCTACAGGATTTCTCTTT 106 349 1579 Antisense
ATTGACACCATCAATACTTCTCCCA 504 5 1626 Antisense
TTCTCCCATTTTTCACAATAGTTCT 372 693 1643 Antisense
GTGGCAGCAGCTCAATGTTTTCAAA 297 491 1696 Antisense
CACATTTTTAATATCTACCGCTCCA 225 195 1770 Antisense
TATCTACCGCTCCACTGGGAATATT 20 659 1781 Antisense
GCAAACTCAAGTCTATATTCGTCCT 100 319 1859 Antisense
AACTTTACACTTTCTCATTTGCTTT 556 139 1902 Antisense
Sequence Source Affymetrix Proprietary Database