[Home] | [Total List]

[182746_at]

Description B0554.5 /REP_DB=WormBase Gene ID /WP=CE07777 /TR=P91003 /GB=AAB37612.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 53      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 351.9
(3)
P 		265.5
(1.5)
M 		158.7
(-0.4)
A 		13.6
(-3)
A 		338
B 292.1
(3)
P 		193.9
(0.9)
A 		169.5
(0.4)
A 		10
(-3)
A 		282
C 322.1
(3)
P 		256.6
(1.4)
A 		192
(-0.1)
P 		72
(-3)
A 		250
avr 322
(3) 		238.7
(1.3) 		173.4
(-0.1) 		31.9
(-3) 		290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 145.9
(1.5)
A 		165.7
(3)
P 		119.9
(-0.6)
P 		149.2
(1.7)
P 		159.7
(2.5)
A 		88.3
(-3)
A 		77
B 176
(2.3)
A 		97.6
(-2.6)
A 		155.6
(1)
P 		187
(3)
P 		184.2
(2.8)
P 		91.4
(-3)
P 		96
C 104.8
(-3)
A 		124
(-2)
M 		158.8
(-0.2)
P 		221.9
(3)
A 		162.8
(-0)
P 		116.6
(-2.4)
M 		117
avr 142.2
(-0) 		129.1
(-0.9) 		144.8
(0.2) 		186
(3) 		168.9
(1.8) 		98.8
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 128.1
(3)
P 		57.6
(-0.4)
M 		41.5
(-1.1)
A 		2
(-3)
A 		126
B 93.2
(3)
P 		47.9
(0)
A 		39.3
(-0.5)
A 		2.1
(-3)
A 		91
C 106.6
(3)
P 		73.8
(0.9)
A 		66.9
(0.5)
P 		12.1
(-3)
A 		95
avr 109.3
(3) 		59.8
(0.1) 		49.2
(-0.5) 		5.4
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 26.9
(-2.1)
A 		58.9
(3)
P 		26.1
(-2.3)
P 		37.8
(-0.4)
P 		48.2
(1.3)
A 		21.5
(-3)
A 		37
B 61.2
(1.1)
A 		32.5
(-3)
A 		37.8
(-2.3)
P 		49.5
(-0.6)
P 		74.9
(3)
P 		34.1
(-2.8)
P 		42
C 38.8
(-2.6)
A 		37.8
(-3)
M 		40.4
(-2)
P 		44.6
(-0.3)
A 		52.7
(3)
P 		39
(-2.5)
M 		15
avr 42.3
(-0.6) 		43.1
(-0.4) 		34.8
(-2.3) 		44
(-0.2) 		58.6
(3) 		31.5
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182746_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15911
Sequence Type Exemplar sequence
Representative Public ID B0554.5 NCBI
Target Description B0554.5 /REP_DB=WormBase Gene ID /WP=CE07777 /TR=P91003 /GB=AAB37612.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070796 NCBI Caenorhabditis elegans B0554.5 (B0554.5) mRNA, complete cds. 11/11 None
SNAP00000032182 ENSEMBL cdna:SNAP chromosome:CEL140:V:424342:426319:1 10/11 None
GENEFINDER00000032191 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:422327:426385:1 11/11 None
B0554.5 ENSEMBL cdna:known chromosome:CEL140:V:424269:426389:1 gene:B0554.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:424341-426319(+) 99.36 100.0
Public Domain and Genome References
Gene Title
Ensembl B0554.5
Entrez Gene 182036 Entrez gene
SwissProt P91003 EMBL-EBI
WormBase CE07777 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37612 Hypothetical protein B0554.5 [Caenorhabditis elegans] ref|NP_503197.1| B0554.5 [Caenorhabditis elegans] 0.0
blast AAQ91895 Hypothetical protein Y39D8A.1d [Caenorhabditis elegans] ref|NP_001024232.1| Y39D8A.1d [Caenorhabditis elegans] pir||T33784 hypothetical protein Y39D8A.1 - Caenorhabditis elegans 0.0
blast AAM48557 Hypothetical protein Y39D8A.1a [Caenorhabditis elegans] ref|NP_741503.1| Y39D8A.1a [Caenorhabditis elegans] 0.0
blast AAB37611 Downstream of daf-16 (regulated by daf-16) protein 20 [Caenorhabditis elegans] ref|NP_503196.1| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-20) [Caenorhabditis elegans] 0.0
blast CAE58262 Hypothetical protein CBG01364 [Caenorhabditis briggsae] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 3.4E-97
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 1.1E-58
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503197.1 12 7-25,54-76,83-100,105-127,140-162,192-214,253-275,285-307,320-342,362-384,396-415,420-442
B0554.5 12 7-25,54-76,83-100,105-127,140-162,192-214,253-275,285-307,320-342,362-384,396-415,420-442
SNAP00000032182 10 7-25,54-76,83-100,105-127,140-162,192-214,261-283,298-320,333-352,357-379
GENEFINDER00000032191 12 381-403,410-427,432-454,467-489,519-541,580-602,612-634,647-669,689-711,723-742,747-769,795-814
Sequence
Target Sequence 
>C. ELEGANS:182746_AT
tttcccaactgcgatgagcttcacaatgcagaactcaaatttgatatatcttgcagcagt
gtacagttttgctgtcggttcaggggaggttttcatgggcataatgatttcattcctgag
taagcgtatcaaaaattttggtcaaaagccaacaatgacaattggtgccattttcaccac
ggcttactgtatcttgatccacctatccacggcgtacgatgctccgatcaagccaactag
tgaagagccactgctgttcaggcattcctaccttctggctctaatcataggcctcatctg
tggaatcggagattgctgtatcaacagtgtccgatctgtgatatgtgcgctggtgatgcc
gaagagacgagctcaagcgttttcggtgtccaagatttatcaggcattcggctcctgcat
tttatttttcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCAACTGCGATGAGCTTCACA 486 669 822 Antisense
ATTTTCACCACGGCTTACTGTATCT 628 13 991 Antisense
TACTGTATCTTGATCCACCTATCCA 36 647 1006 Antisense
AAGAGCCACTGCTGTTCAGGCATTC 353 153 1064 Antisense
CTACCTTCTGGCTCTAATCATAGGC 248 225 1089 Antisense
CATAGGCCTCATCTGTGGAATCGGA 334 213 1107 Antisense
GTGTCCGATCTGTGATATGTGCGCT 262 487 1148 Antisense
GTGCGCTGGTGATGCCGAAGAGACG 447 475 1166 Antisense
GACGAGCTCAAGCGTTTTCGGTGTC 477 379 1187 Antisense
TTATCAGGCATTCGGCTCCTGCATT 368 679 1218 Antisense
GGCTCCTGCATTTTATTTTTCTTGA 588 539 1231 Antisense
Sequence Source Affymetrix Proprietary Database