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[182744_at]

Description C07D8.5 /REP_DB=WormBase Gene ID /WP=CE06775 /TR=P91021 /GB=AAB37972.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.7
(-3)
A 		3.2
(-0.8)
A 		2.2
(-2.3)
A 		5.8
(3)
A 		4
B 2.3
(0.8)
A 		2
(-0.8)
A 		1.6
(-3)
A 		2.7
(3)
A 		1
C 1
(-3)
A 		4.7
(3)
A 		1.8
(-1.7)
A 		4.3
(2.4)
A 		4
avr 1.7
(-3) 		3.3
(0.7) 		1.9
(-2.5) 		4.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.1
(-2.3)
A 		4
(0.4)
A 		1.6
(-3)
A 		5.8
(3)
A 		2.2
(-2.1)
A 		2.6
(-1.6)
A 		4
B 0.9
(-3)
A 		1.6
(-1.9)
A 		4.6
(3)
A 		1.9
(-1.4)
A 		1.3
(-2.4)
A 		3.1
(0.6)
A 		4
C 2.9
(-2.6)
A 		18.3
(3)
A 		1.8
(-3)
A 		3
(-2.6)
A 		2.7
(-2.7)
A 		4.3
(-2.1)
A 		17
avr 2
(-3) 		8
(3) 		2.7
(-2.3) 		3.6
(-1.4) 		2.1
(-2.9) 		3.3
(-1.7) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.6
(-3)
A 		0.7
(-1)
A 		0.6
(-3)
A 		0.9
(3)
A 		0
B 0.7
(3)
A 		0.5
(-1)
A 		0.4
(-3)
A 		0.6
(1)
A 		0
C 0.3
(-3)
A 		1.3
(3)
A 		0.6
(-1.2)
A 		0.7
(-0.6)
A 		1
avr 0.5
(-3) 		0.8
(3) 		0.5
(-3) 		0.7
(1) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.4
(-2.5)
A 		1.4
(2.5)
A 		0.3
(-3)
A 		1.5
(3)
A 		0.7
(-1)
A 		0.6
(-1.5)
A 		1
B 0.3
(-3)
A 		0.5
(-1.5)
A 		1.1
(3)
A 		0.5
(-1.5)
A 		0.5
(-1.5)
A 		1.1
(3)
A 		1
C 1.1
(-2.3)
A 		5.6
(3)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		0.9
(-2.5)
A 		1.5
(-1.8)
A 		5
avr 0.6
(-3) 		2.5
(3) 		0.6
(-3) 		0.9
(-2.1) 		0.7
(-2.7) 		1.1
(-1.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182744_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16336
Sequence Type Exemplar sequence
Representative Public ID C07D8.5 NCBI
Target Description C07D8.5 /REP_DB=WormBase Gene ID /WP=CE06775 /TR=P91021 /GB=AAB37972.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076842(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076842 NCBI Caenorhabditis elegans C07D8.5 (C07D8.5) mRNA, complete cds. 11/11 None
SNAP00000029011 ENSEMBL cdna:SNAP chromosome:CEL140:X:7343992:7344496:1 11/11 None
GENEFINDER00000029017 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7343992:7363123:1 11/11 None
C07D8.5 ENSEMBL cdna:known chromosome:CEL140:X:7343992:7344496:1 gene:C07D8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7343990-7344495(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07D8.5
Entrez Gene 182366 Entrez gene
SwissProt P91021 EMBL-EBI
WormBase CE06775 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 0.0
blast AAA82377 Hypothetical protein K09E3.1 [Caenorhabditis elegans] ref|NP_510774.1| K09E3.1 [Caenorhabditis elegans] 0.0
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 1.0E-164
blast AAB37972 Hypothetical protein C07D8.5 [Caenorhabditis elegans] ref|NP_509243.1| C07D8.5 [Caenorhabditis elegans] 3.0E-60
blast CAE69256 Hypothetical protein CBG15305 [Caenorhabditis briggsae] 6.0E-25
blast AAB37976 Hypothetical protein C07D8.6 [Caenorhabditis elegans] ref|NP_509242.1| C07D8.6 [Caenorhabditis elegans] pdb|1QWK|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Hypothetical 35.2 Kda Protein (Aldose Reductase Family Member) 1.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 2.8E-31
Sequence
Target Sequence 
>C. ELEGANS:182744_AT
gctggacgatcctcaaattctgatgggaatgcatcggacgacggacatccaccagcgctg
acaccaatcttgttgaagtcgtatttgaaaaatagtgacgcaaagtcacatctgactcta
tccaatgcacattctatgccagcggttggactcggaacgtggcagtcaaatgcagaagac
gtgatttcagcggtcaaagcagcagtgaaaaatggatacagtttgatcgatacggcatct
ggctacaacaacgaagaattcattggaactgctatcaaggaagtgattgcagaaggcgtc
gtgaagagagaagacttgttcatcactacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGACGATCCTCAAATTCTGATG 382 295 43 Antisense
AATGCATCGGACGACGGACATCCAC 127 165 70 Antisense
AGCGCTGACACCAATCTTGTTGAAG 17 77 96 Antisense
GTCACATCTGACTCTATCCAATGCA 379 465 147 Antisense
CAATGCACATTCTATGCCAGCGGTT 342 181 165 Antisense
GCCAGCGGTTGGACTCGGAACGTGG 111 281 180 Antisense
GTGATTTCAGCGGTCAAAGCAGCAG 31 485 223 Antisense
GATACAGTTTGATCGATACGGCATC 168 423 257 Antisense
ATACGGCATCTGGCTACAACAACGA 135 23 272 Antisense
GTGATTGCAGAAGGCGTCGTGAAGA 264 485 325 Antisense
GAGAAGACTTGTTCATCACTACAAA 40 393 350 Antisense
Sequence Source Affymetrix Proprietary Database