[Home] | [Total List]

[182743_at]

Description Y47D3B.6 /REP_DB=WormBase Gene ID /WP=CE24344 /TR=Q9U2B8 /GB=CAA21043.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 77      6grp_total > 0      4grp_total > 57      6grp_highest_sub > 02      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4303
1 2 3 4 range
A 220.5
(-3)
P 		4232.8
(3)
P 		3890.7
(2.5)
P 		231.8
(-3)
P 		4012
B 198.3
(-2.9)
P 		4311.4
(2.8)
P 		4454.3
(3)
P 		151.3
(-3)
P 		4303
C 285.6
(-2.8)
P 		4393
(3)
P 		3686.9
(2)
P 		165.9
(-3)
P 		4227
avr 234.8
(-2.9) 		4312.4
(3) 		4010.6
(2.6) 		183
(-3) 		4129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1314
1 2 3 4 5 6 range
A 1315.9
(-1)
P 		2050.1
(3)
P 		1241
(-1.4)
P 		948.5
(-3)
P 		1482.9
(-0.1)
P 		1665.2
(0.9)
P 		1102
B 1584.2
(-0.3)
P 		2170
(3)
P 		1216.7
(-2.4)
P 		1104.4
(-3)
P 		1359.6
(-1.6)
P 		1577.7
(-0.3)
P 		1066
C 1357.6
(-1.2)
P 		2262.8
(3)
P 		1195
(-2)
P 		971.1
(-3)
P 		1486.4
(-0.6)
P 		1247.8
(-1.7)
P 		1292
avr 1419.2
(-0.9) 		2161
(3) 		1217.6
(-1.9) 		1008
(-3) 		1443
(-0.7) 		1496.9
(-0.5) 		1153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1257
1 2 3 4 range
A 80.3
(-2.7)
P 		918.8
(2.4)
P 		1017.1
(3)
P 		33.9
(-3)
P 		983
B 63.2
(-2.8)
P 		1064.8
(3)
P 		1032.2
(2.8)
P 		32.2
(-3)
P 		1033
C 94.5
(-2.7)
P 		1263
(2.9)
P 		1285
(3)
P 		28
(-3)
P 		1257
avr 79.3
(-2.7) 		1082.2
(2.8) 		1111.4
(3) 		31.4
(-3) 		1080

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 534
1 2 3 4 5 6 range
A 242.6
(-3)
P 		729.1
(3)
P 		270.3
(-2.6)
P 		240.6
(-3)
P 		447.5
(-0.5)
P 		405.4
(-1)
P 		489
B 551.2
(0.6)
P 		722.3
(3)
P 		295.5
(-3)
P 		292.5
(-3)
P 		552.4
(0.6)
P 		588.3
(1.1)
P 		430
C 503.2
(0.7)
P 		690.4
(3)
P 		304.1
(-1.7)
P 		195.3
(-3)
P 		481
(0.5)
P 		417.7
(-0.3)
P 		495
avr 432.3
(-0.6) 		713.9
(3) 		290
(-2.4) 		242.8
(-3) 		493.6
(0.2) 		470.5
(-0.1) 		471
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182743_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7720
Sequence Type Exemplar sequence
Representative Public ID Y47D3B.6 NCBI
Target Description Y47D3B.6 /REP_DB=WormBase Gene ID /WP=CE24344 /TR=Q9U2B8 /GB=CAA21043.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067070 NCBI Caenorhabditis elegans Y47D3B.6 (Y47D3B.6) mRNA, complete cds. 11/11 None
GENEFINDER00000004523 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11426051:11428053:1 11/11 None
SNAP00000004515 ENSEMBL cdna:SNAP chromosome:CEL140:III:11427400:11428053:1 11/11 None
Y47D3B.6 ENSEMBL cdna:known chromosome:CEL140:III:11427011:11428223:1 gene:Y47D3B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11427098-11428049(+) 87.04 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D3B.6
Entrez Gene 176573 Entrez gene
SwissProt Q9U2B8 EMBL-EBI
WormBase CE24344 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21043 Hypothetical protein Y47D3B.6 [Caenorhabditis elegans] ref|NP_499471.1| Y47D3B.6 [Caenorhabditis elegans] 6.0E-43
blast CAA21043 Hypothetical protein Y47D3B.6 [Caenorhabditis elegans] ref|NP_499471.1| Y47D3B.6 [Caenorhabditis elegans] 9.0E-43
blast CAA21043 Hypothetical protein Y47D3B.6 [Caenorhabditis elegans] ref|NP_499471.1| Y47D3B.6 [Caenorhabditis elegans] 1.0E-42
blast CAE67711 Hypothetical protein CBG13285 [Caenorhabditis briggsae] 3.0E-39
blast CAE67711 Hypothetical protein CBG13285 [Caenorhabditis briggsae] 5.0E-39
blast CAE67711 Hypothetical protein CBG13285 [Caenorhabditis briggsae] 7.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-16
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-16
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-16
Sequence
Target Sequence 
>C. ELEGANS:182743_AT
gctcaaccagctctcggatgtgctgccccatgcctcggagccgctcaatgcgtcgccgga
gcctgcgcctgcgccaacccagccgtcgtctactcgccagtcatcggatgccagccagct
atcccagttgcgccagctccagttgtcgccggacgtctcatcccacaagccctcccagga
tccccatgtgagccaggagtcgagtgcaccggaggatcggtctgctccgtcggtgtctgc
ctctgcccaccagagctcatccaggaaggaaccgtctgcgttgcccgcaccatctacgga
gtcgtcccaccaccagtcatcccagttgccccagtcatcccagttgcccttggagcccca
tgtgccgctccagtcgctccagtctacgcctcagctgccccagcctgtgtcccaggagct
gtatgctctgctggagtctgccagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAACCAGCTCTCGGATGTGCTG 586 301 325 Antisense
TCAACCAGCTCTCGGATGTGCTGCC 422 631 327 Antisense
GATCCCCATGTGAGCCAGGAGTCGA 173 417 503 Antisense
CCAGGAGTCGAGTGCACCGGAGGAT 37 273 517 Antisense
TGCACCGGAGGATCGGTCTGCTCCG 678 577 529 Antisense
CCACCAGAGCTCATCCAGGAAGGAA 638 273 571 Antisense
CCAGGAAGGAACCGTCTGCGTTGCC 709 259 585 Antisense
CAGCCTGTGTCCCAGGAGCTGTATG 359 203 725 Antisense
GTCCCAGGAGCTGTATGCTCTGCTG 496 475 733 Antisense
AGCTGTATGCTCTGCTGGAGTCTGC 492 79 741 Antisense
TATGCTCTGCTGGAGTCTGCCAGTG 269 655 746 Antisense
Sequence Source Affymetrix Proprietary Database