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[182742_at]

Description Y80D3A.2 /REP_DB=WormBase Gene ID /WP=CE24674 /TR=Q9U1Q7 /GB=CAB60444.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 81      6grp_total > 38      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 362.3
(3)
P 		264.6
(0.2)
P 		278.3
(0.6)
P 		153.9
(-3)
P 		208
B 303
(3)
P 		249.2
(-0.1)
P 		254.9
(0.3)
P 		198
(-3)
P 		105
C 372.5
(3)
P 		283
(-0.7)
P 		331.5
(1.3)
P 		226.4
(-3)
P 		146
avr 345.9
(3) 		265.6
(-0.1) 		288.2
(0.7) 		192.8
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 107.3
(-3)
P 		286.7
(2.7)
P 		181
(-0.7)
P 		270.9
(2.2)
P 		212.4
(0.3)
P 		296.9
(3)
P 		190
B 297.2
(3)
P 		275.2
(1.9)
P 		180.2
(-3)
P 		205.2
(-1.7)
P 		267.5
(1.5)
P 		258.9
(1)
P 		117
C 462.6
(3)
P 		263.5
(-1)
P 		270.6
(-0.8)
P 		162.2
(-3)
P 		270.7
(-0.8)
P 		316.8
(0.1)
P 		300
avr 289
(2.9) 		275.1
(1.8) 		210.6
(-3) 		212.8
(-2.8) 		250.2
(-0) 		290.9
(3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 131.9
(3)
P 		57.4
(-1.1)
P 		72.8
(-0.2)
P 		22.5
(-3)
P 		109
B 96.6
(3)
P 		61.5
(-0.9)
P 		59.1
(-1.1)
P 		42.2
(-3)
P 		54
C 123.3
(3)
P 		81.4
(0)
P 		115.5
(2.5)
P 		38.2
(-3)
P 		85
avr 117.3
(3) 		66.8
(-0.7) 		82.5
(0.5) 		34.3
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 19.8
(-3)
P 		101.9
(3)
P 		39.4
(-1.6)
P 		68.7
(0.6)
P 		64.1
(0.2)
P 		72.3
(0.8)
P 		82
B 103.4
(2.5)
P 		91.6
(1.4)
P 		43.7
(-3)
P 		54.4
(-2)
P 		108.7
(3)
P 		96.5
(1.9)
P 		65
C 171.5
(3)
P 		80.4
(-0.9)
P 		68.9
(-1.4)
P 		32.6
(-3)
P 		87.6
(-0.6)
P 		106
(0.2)
P 		139
avr 98.2
(3) 		91.3
(2.1) 		50.7
(-3) 		51.9
(-2.8) 		86.8
(1.6) 		91.6
(2.2) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182742_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13826
Sequence Type Exemplar sequence
Representative Public ID Y80D3A.2 NCBI
Target Description Y80D3A.2 /REP_DB=WormBase Gene ID /WP=CE24674 /TR=Q9U1Q7 /GB=CAB60444.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075283(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075283 NCBI Caenorhabditis elegans Y80D3A.2 (Y80D3A.2) mRNA, complete cds. 9/11 None
Y80D3A.2.1 ENSEMBL cdna:known chromosome:CEL140:V:18862877:18897548:-1 gene:Y80D3A.2 9/11 None
Y80D3A.2.2 ENSEMBL cdna:known chromosome:CEL140:V:18862877:18897547:-1 gene:Y80D3A.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017383 2/11 Cross Hyb Matching Probes None
GENEFINDER00000017385 2/11 Cross Hyb Matching Probes None
GENEFINDER00000017393 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18863322-18897541(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y80D3A.2
Entrez Gene 180232 Entrez gene
SwissProt Q9U1Q7 EMBL-EBI
WormBase CE36623 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12558_AT expressed protein at
ATH1-121501:266410_AT expressed protein at
CANINE:1604107_AT similar to aquarius cfa
CANINE_2:CFA.1188.1.S1_AT similar to aquarius cfa
CANINE_2:CFAAFFX.13302.1.S1_S_AT similar to aquarius cfa
DROSOPHILA_2:1636033_AT dm
DROSGENOME1:153170_AT dm
DROSGENOME1:149714_AT dm
CHICKEN:GGA.18387.1.S1_S_AT aquarius homolog (mouse) gga
CHICKEN:GGAAFFX.23051.1.S1_AT aquarius homolog (mouse) gga
CHICKEN:GGAAFFX.6168.1.S1_S_AT aquarius homolog (mouse) gga
HG-U133_PLUS_2:212583_AT aquarius homolog (mouse) hs
HG-U133A_2:212583_AT aquarius homolog (mouse) hs
HG-U133A:212583_AT aquarius homolog (mouse) hs
HG-U95AV2:41712_AT aquarius homolog (mouse) hs
HU35KSUBB:RC_W04499_AT aquarius homolog (mouse) hs
U133_X3P:HS.129952.0.S2_3P_AT aquarius homolog (mouse) hs
U133_X3P:HS.129952.0.S1_3P_AT aquarius homolog (mouse) hs
HG-U133A_2:212584_AT aquarius homolog (mouse) hs
HG-U133_PLUS_2:212584_AT aquarius homolog (mouse) hs
HG-U133A:212584_AT aquarius homolog (mouse) hs
MOE430A:1430275_A_AT aquarius mm
MOUSE430A_2:1430275_A_AT aquarius mm
MOUSE430_2:1430275_A_AT aquarius mm
MOUSE430A_2:1430971_A_AT aquarius mm
MOE430A:1430971_A_AT aquarius mm
MOUSE430_2:1430971_A_AT aquarius mm
MOUSE430A_2:1452448_AT aquarius mm
MOUSE430_2:1452448_AT aquarius mm
MOE430A:1452448_AT aquarius mm
MU11KSUBA:U90333_S_AT aquarius mm
MU11KSUBA:AA018016_S_AT aquarius mm
MG-U74AV2:104549_AT aquarius mm
MG-U74AV2:103950_AT aquarius mm
MG-U74CV2:171529_AT aquarius mm
MOE430A:1430972_X_AT aquarius mm
MOUSE430A_2:1430972_X_AT aquarius mm
MOUSE430_2:1430972_X_AT aquarius mm
MOE430A:1433497_AT aquarius mm
MOUSE430A_2:1433497_AT aquarius mm
MOUSE430_2:1433497_AT aquarius mm
MU19KSUBA:TC18871_AT Aquarius mm
MU19KSUBA:TC18871_G_AT Aquarius mm
MU19KSUBA:TC18872_I_AT Aquarius mm
RG-U34A:RC_AA893708_AT aquarius (predicted) rn
RAE230A:1373704_AT aquarius (predicted) rn
RAT230_2:1373704_AT aquarius (predicted) rn
RAE230B:1394845_AT aquarius (predicted) rn
RAT230_2:1394845_AT aquarius (predicted) rn
RAE230B:1385017_AT aquarius (predicted) rn
RAT230_2:1385017_AT aquarius (predicted) rn
RAE230B:1380794_AT Aquarius (predicted) rn
RAT230_2:1380794_AT Aquarius (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB60444 Hypothetical protein Y80D3A.2 [Caenorhabditis elegans] ref|NP_507684.3| Y80D3A.2 [Caenorhabditis elegans] 0.0
blast BAA25486.3 KIAA0560 protein [Homo sapiens] 0.0
blast NP_055506 aquarius [Homo sapiens] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182742_AT
tggttattctaccgtttgaagcacatccgactatccggaaatggaatgaacggtccaaag
atggagaacctatggaaattcaggttcggagagtacaatttgatggaaaatggacaaaaa
ataagccaaattcaagaaattttgataaaaaatcgattttggacacacttcacatgacac
atttcgttcacgaattctacatgagtaatctgccagcaatgcgtgacgcatatgaacaag
caatgaatgaatatatggaatcccaacgtctactcaatccaccaattgatgaaacacaaa
tggatgtggagactgaacacgagaagaagcatcgagaaggtgtggtgattttggggctga
aatttcctcctgaaaatctatggaaaggaagaaaaagcaggaaaagcgaaaaatttaaaa
ttttcgaaaacaaaaaaaaactttcatgtgaattttctatggaaagaaagaaaaagcagg
aaatggacgataaaaaggaagcggacattcatttcgaggatatggatcatgaaatgcaag
aacctgctgctactgcagcaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTTATTCTACCGTTTGAAGCACA 298 551 3047 Antisense
GTTTGAAGCACATCCGACTATCCGG 241 451 3060 Antisense
GATTTTGGACACACTTCACATGACA 639 429 3201 Antisense
TCACATGACACATTTCGTTCACGAA 577 625 3216 Antisense
AATCTGCCAGCAATGCGTGACGCAT 101 167 3253 Antisense
ATATGGAATCCCAACGTCTACTCAA 48 21 3299 Antisense
ACGTCTACTCAATCCACCAATTGAT 245 93 3312 Antisense
GAAGGTGTGGTGATTTTGGGGCTGA 294 335 3382 Antisense
TGGGGCTGAAATTTCCTCCTGAAAA 46 553 3398 Antisense
GGAAGCGGACATTCATTTCGAGGAT 148 531 3543 Antisense
AGAACCTGCTGCTACTGCAGCACCG 324 73 3585 Antisense
Sequence Source Affymetrix Proprietary Database