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[182741_s_at]

Description D2096.4 /REP_DB=WormBase Gene ID /WP=CE04302 /TR=Q19003 /GB=AAA81490.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 85      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 73      6grp_total > 83      4grp_total > 62      6grp_highest_sub > In      6grp_cgc > 65      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 308
1 2 3 4 range
A 396.9
(3)
P 		321.9
(0.9)
P 		391.2
(2.8)
P 		184.2
(-3)
P 		213
B 480.7
(3)
P 		324.1
(-1.1)
P 		304.9
(-1.7)
P 		254
(-3)
P 		227
C 492.6
(3)
P 		360
(0)
P 		383.2
(0.5)
P 		225.4
(-3)
P 		267
avr 456.7
(3) 		335.3
(-0.1) 		359.8
(0.5) 		221.2
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 423
(-3)
P 		479.9
(-0.9)
P 		506.3
(0)
P 		532.1
(1)
P 		466.2
(-1.4)
P 		587.8
(3)
P 		165
B 401.6
(-3)
P 		490.1
(-0.5)
P 		526.8
(0.6)
P 		458.7
(-1.4)
P 		611.5
(3)
P 		466.4
(-1.1)
P 		210
C 398.3
(-1.5)
P 		514.2
(1.2)
P 		593.3
(3)
P 		334.3
(-3)
P 		547.8
(1.9)
P 		482.7
(0.4)
P 		259
avr 407.6
(-3) 		494.7
(0.9) 		542.1
(3) 		441.7
(-1.5) 		541.8
(3) 		512.3
(1.7) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 144.5
(3)
P 		69.9
(-0.8)
P 		102.3
(0.8)
P 		27
(-3)
P 		118
B 153.3
(3)
P 		80
(-1.4)
P 		70.6
(-2)
P 		54.1
(-3)
P 		99
C 163.1
(3)
P 		103.5
(0.1)
P 		133.5
(1.6)
P 		38
(-3)
P 		125
avr 153.6
(3) 		84.5
(-0.6) 		102.1
(0.3) 		39.7
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 78
(-3)
P 		170.7
(3)
P 		110.3
(-0.9)
P 		134.9
(0.7)
P 		140.7
(1.1)
P 		143.1
(1.2)
P 		93
B 139.7
(-2.1)
P 		163.1
(-1)
P 		127.9
(-2.7)
P 		121.5
(-3)
P 		248.4
(3)
P 		173.9
(-0.5)
P 		127
C 147.6
(1.4)
P 		156.9
(1.9)
P 		151
(1.6)
P 		67.2
(-3)
P 		177.3
(3)
P 		161.6
(2.1)
P 		110
avr 121.8
(-2) 		163.6
(1.1) 		129.7
(-1.4) 		107.9
(-3) 		188.8
(3) 		159.5
(0.8) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182741_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10099
Sequence Type Exemplar sequence
Representative Public ID D2096.4 NCBI
Target Description D2096.4 /REP_DB=WormBase Gene ID /WP=CE04302 /TR=Q19003 /GB=AAA81490.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069017 NCBI Caenorhabditis elegans SQuashed Vulva family member (sqv-1) (sqv-1) mRNA, complete cds. 11/11 None
SNAP00000025668 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8361105:8362987:1 11/11 None
GENEFINDER00000025693 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8361105:8362987:1 11/11 None
D2096.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:8361069:8363318:1 gene:D2096.4 11/11 None
D2096.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:8361071:8363319:1 gene:D2096.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8361110-8362993(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sqv-1
Ensembl D2096.4
Entrez Gene 177631 Entrez gene
SwissProt Q19003 EMBL-EBI
WormBase CE04302 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247720_AT UDP-glucuronic acid decarboxylase (UXS3) at
CANINE_2:CFAAFFX.4057.1.S1_AT similar to UDP-glucuronate decarboxylase 1 cfa
CANINE_2:CFAAFFX.4059.1.S1_AT similar to UDP-glucuronate decarboxylase 1 cfa
CANINE_2:CFAAFFX.4059.1.S1_S_AT similar to UDP-glucuronate decarboxylase 1 cfa
DROSGENOME1:154883_AT dm
DROSOPHILA_2:1629109_AT dm
CHICKEN:GGAAFFX.10754.1.S1_AT similar to UDP-glucuronate decarboxylase 1 gga
HG-U133_PLUS_2:219675_S_AT UDP-glucuronate decarboxylase 1 hs
HG-U133A:219675_S_AT UDP-glucuronate decarboxylase 1 hs
HG-U133A_2:219675_S_AT UDP-glucuronate decarboxylase 1 hs
HU35KSUBA:R91222_AT UDP-glucuronate decarboxylase 1 hs
HU35KSUBD:RC_AA243028_AT UDP-glucuronate decarboxylase 1 hs
HU35KSUBD:RC_H69798_AT UDP-glucuronate decarboxylase 1 hs
U133_X3P:G13376625_3P_A_AT UDP-glucuronate decarboxylase 1 hs
HG-U133_PLUS_2:225583_AT UDP-glucuronate decarboxylase 1 hs
HG-U133B:225583_AT UDP-glucuronate decarboxylase 1 hs
HG-U95B:46299_AT UDP-glucuronate decarboxylase 1 hs
U133_X3P:HS2.385559.1.S1_3P_AT UDP-glucuronate decarboxylase 1 hs
HG-U133_PLUS_2:1561236_AT UDP-glucuronate decarboxylase 1 hs
HG-U95E:67667_AT UDP-glucuronate decarboxylase 1 hs
HG-U95D:81027_AT UDP-glucuronate decarboxylase 1 hs
MG-U74AV2:102423_AT UDP-glucuronate decarboxylase 1 mm
MG-U74BV2:106490_AT UDP-glucuronate decarboxylase 1 mm
MOE430A:1426275_A_AT UDP-glucuronate decarboxylase 1 mm
MOUSE430A_2:1426275_A_AT UDP-glucuronate decarboxylase 1 mm
MOUSE430_2:1426275_A_AT UDP-glucuronate decarboxylase 1 mm
MOE430A:1452011_A_AT UDP-glucuronate decarboxylase 1 mm
MOUSE430A_2:1452011_A_AT UDP-glucuronate decarboxylase 1 mm
MOUSE430_2:1452011_A_AT UDP-glucuronate decarboxylase 1 mm
MU19KSUBB:TC32599_AT UDP-glucuronate decarboxylase 1, mRNA (cDNA clone MGC:47494 IMAGE:4935237) mm
RAE230A:1376262_AT UDP-glucuronate decarboxylase 1 rn
RAT230_2:1376262_AT UDP-glucuronate decarboxylase 1 rn
RAE230A:1376127_AT UDP-glucuronate decarboxylase 1 rn
RAT230_2:1376127_AT UDP-glucuronate decarboxylase 1 rn
RG-U34C:RC_AI177264_AT UDP-glucuronate decarboxylase 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9225 nucleotide-sugar metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_501418 SQuashed Vulva family member (sqv-1) [Caenorhabditis elegans] gb|AAA81490.1| Squashed vulva protein 1 [Caenorhabditis elegans] gb|AAN39843.1| UDP-glucuronic acid decarboxylase [Caenorhabditis elegans] 0.0
blast CAE71530 Hypothetical protein CBG18465 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001509 EMBL-EBI NAD-dependent epimerase/dehydratase 8.8E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501418.1 1 13-35
D2096.4.2 1 13-35
D2096.4.1 1 13-35
SNAP00000025668 1 13-35
GENEFINDER00000025693 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:182741_S_AT
attggaccacgagcatgttatgatgagggtaaacgagttgccgaatcgcttatggttgct
tacaataaacaagaaaatatcaagattcgaattgctcgaattttcaacacttttggacca
agaatgcacatgaatgatggacgagttgtttcgaattttataattcaggcacttcaggat
aaaccaatcacgatctacgggaacggaactcaaacgcgatcattccaatatgtgacagat
cttgttgatggactgattaagctgatgaacagtaattactctctcccagtcaacattgga
aacccagaagaacatacaatcgggcagtttgcaacaattattcgtgatcttgttccagga
tcaacaagtgaaattgtgaatttggaatctcaacaggatgatcctcaacaaagaaggcca
gatatccggagagctgctgaacaaatatcatgggctccacaagttcatatgaaagacgga
ctccttaaaactgttgactactttcgtgctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGACCACGAGCATGTTATGATG 591 3 829 Antisense
GTTGCCGAATCGCTTATGGTTGCTT 116 441 865 Antisense
GCTCGAATTTTCAACACTTTTGGAC 418 299 922 Antisense
GGAACGGAACTCAAACGCGATCATT 58 531 1028 Antisense
GAACAGTAATTACTCTCTCCCAGTC 527 351 1095 Antisense
TACTCTCTCCCAGTCAACATTGGAA 673 645 1105 Antisense
AATTATTCGTGATCTTGTTCCAGGA 288 175 1164 Antisense
AGGCCAGATATCCGGAGAGCTGCTG 588 53 1243 Antisense
ATATCATGGGCTCCACAAGTTCATA 677 17 1273 Antisense
GACGGACTCCTTAAAACTGTTGACT 89 377 1303 Antisense
AACTGTTGACTACTTTCGTGCTGAA 251 141 1317 Antisense
Sequence Source Affymetrix Proprietary Database