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[182740_at]

Description ZK994.4 /REP_DB=WormBase Gene ID /WP=CE15489 /TR=O44086 /GB=AAB88611.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 45      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 59
(3)
P 		49.6
(1.4)
A 		39.1
(-0.4)
A 		23.8
(-3)
A 		35
B 66.9
(2)
P 		76.7
(3)
A 		25.3
(-2.3)
A 		18.3
(-3)
A 		58
C 68.1
(3)
P 		44.6
(-0.2)
A 		24.6
(-3)
A 		31.6
(-2)
A 		44
avr 64.7
(3) 		57
(1.8) 		29.7
(-2.2) 		24.6
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 21.9
(-1.2)
A 		50.8
(2.1)
P 		58.8
(3)
A 		36.8
(0.5)
P 		5.5
(-3)
A 		28.9
(-0.4)
A 		53
B 37.3
(0.6)
A 		48.5
(3)
A 		48.5
(3)
A 		20.5
(-3)
A 		26.2
(-1.8)
A 		29.7
(-1)
P 		28
C 57.5
(3)
M 		48.8
(1.9)
P 		47.4
(1.7)
A 		40
(0.8)
A 		9.4
(-3)
A 		22.8
(-1.3)
A 		48
avr 38.9
(1) 		49.4
(2.7) 		51.6
(3) 		32.4
(-0) 		13.7
(-3) 		27.1
(-0.9) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 21.5
(3)
P 		10.8
(-0.6)
A 		10.2
(-0.8)
A 		3.5
(-3)
A 		18
B 21.3
(3)
P 		18.9
(2.2)
A 		5.9
(-2.3)
A 		3.9
(-3)
A 		17
C 22.6
(3)
P 		12.8
(-0.4)
A 		8.6
(-1.9)
A 		5.3
(-3)
A 		17
avr 21.8
(3) 		14.2
(0.4) 		8.2
(-1.6) 		4.2
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 4
(-2.2)
A 		18.1
(3)
P 		12.8
(1.1)
A 		9.3
(-0.2)
P 		1.7
(-3)
A 		7
(-1.1)
A 		16
B 13
(1.2)
A 		16.2
(3)
A 		11.8
(0.6)
A 		5.4
(-3)
A 		10.7
(-0.1)
A 		11.1
(0.2)
P 		11
C 21.3
(3)
M 		14.9
(0.9)
P 		12.1
(-0)
A 		8.1
(-1.4)
A 		3.1
(-3)
A 		7.6
(-1.5)
A 		18
avr 12.8
(1.1) 		16.4
(3) 		12.2
(0.8) 		7.6
(-1.7) 		5.2
(-3) 		8.6
(-1.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182740_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11579
Sequence Type Exemplar sequence
Representative Public ID ZK994.4 NCBI
Target Description ZK994.4 /REP_DB=WormBase Gene ID /WP=CE15489 /TR=O44086 /GB=AAB88611.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072786 NCBI Caenorhabditis elegans ZK994.4 (ZK994.4) mRNA, complete cds. 11/11 None
GENEFINDER00000022132 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8492698:8504749:1 11/11 None
ZK994.4 ENSEMBL cdna:known chromosome:CEL140:V:8497484:8498924:1 gene:ZK994.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8497484-8498925(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK994.4
Entrez Gene 191485 Entrez gene
SwissProt O44086 EMBL-EBI
WormBase CE15489 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.24392.1.S1_AT similar to leucine rich repeat containing 22 cfa
CANINE_2:CFAAFFX.24398.1.S1_AT similar to leucine rich repeat containing 22 cfa
CHICKEN:GGAAFFX.1542.1.S1_AT similar to RIKEN cDNA A930010E21 gga
CHICKEN:GGAAFFX.1543.1.S1_AT similar to RIKEN cDNA A930010E21 gga
MOE430B:1443940_AT leucine rich repeat containing 22 mm
MOUSE430_2:1443940_AT leucine rich repeat containing 22 mm
Protein Similarities
Method ID Description E-Value
blast CAE58397 Hypothetical protein CBG01526 [Caenorhabditis briggsae] 0.0
blast AAB88610 Peroxidasin (drosophila peroxidase) homolog protein 1 [Caenorhabditis elegans] ref|NP_505188.2| ZK994.3 [Caenorhabditis elegans] 0.0
blast CAE70782 Hypothetical protein CBG17537 [Caenorhabditis briggsae] 0.0
blast AAB88611 Hypothetical protein ZK994.4 [Caenorhabditis elegans] ref|NP_505187.1| ZK994.4 [Caenorhabditis elegans] 1.0E-128
blast CAE58397 Hypothetical protein CBG01526 [Caenorhabditis briggsae] 6.0E-94
blast ABB21119 variable lymphocyte receptor A [Eptatretus stoutii] 4.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.97
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0071
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.19
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0033
Pfam IPR000372 EMBL-EBI Cysteine-rich flanking region, N-terminal 2.5E-10
Pfam IPR000483 EMBL-EBI Cysteine-rich flanking region, C-terminal 0.0039
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.97
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0071
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.19
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0033
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 6.2E-94
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.2E-75
Pfam IPR000372 EMBL-EBI Cysteine-rich flanking region, N-terminal 2.5E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.7E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.1E-10
Sequence
Target Sequence 
>C. ELEGANS:182740_AT
tgtggctggattggagtgtcccgtggaatgtacttgtgataagaagggacttgtagtgga
ttgcagtagttctggcctcaccaggattccaaaaaatatttcgcggaatgttcgtagttt
ggtaattaggaacaaccgtattcacaaactgaaacgatctgatttggaaggatttaatca
gcttgaaactcttgtccttactcataataaaattaaaataattgaagagaatgttcttga
tcaccttccagagctgaaacgtctttcattagctcataatgaactggtttatattccacc
actttgctctgattctcggccactagcatctctgaatttgaaacgaaaccacattcaatt
tattgacgagcaggttctacgttatttcccagatcttacacaactcgatttttcacacaa
tagaatacagtcgttacgtacaaaacttttcgataatcttccagctctctcacatgcaca
tttacattcaaatccttggcattgtgattgcagggcatcaaaagtaaaagccttgttgca
aaaggtgaaatgggagaaaaaagtatactgtacaaatcccgttgagctacgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGCTGGATTGGAGTGTCCCGTG 246 555 63 Antisense
GTGTCCCGTGGAATGTACTTGTGAT 411 487 78 Antisense
TGGATTGCAGTAGTTCTGGCCTCAC 109 551 119 Antisense
CAGCTTGAAACTCTTGTCCTTACTC 49 197 241 Antisense
GATCACCTTCCAGAGCTGAAACGTC 41 419 301 Antisense
GAAACGTCTTTCATTAGCTCATAAT 550 357 318 Antisense
CGAGCAGGTTCTACGTTATTTCCCA 440 249 429 Antisense
ATTTCCCAGATCTTACACAACTCGA 373 17 446 Antisense
ACTTTTCGATAATCTTCCAGCTCTC 274 103 507 Antisense
AGCTCTCTCACATGCACATTTACAT 217 81 525 Antisense
GTACAAATCCCGTTGAGCTACGTCA 421 459 632 Antisense
Sequence Source Affymetrix Proprietary Database