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[182739_at]

Description F40D4.13 /REP_DB=WormBase Gene ID /WP=CE19847 /TR=Q9XV33 /GB=CAB04361.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 58.4
(-0.2)
A 		19.4
(-2.3)
A 		7.2
(-3)
A 		115.4
(3)
A 		108
B 48
(-0.7)
A 		80.8
(3)
A 		46.8
(-0.9)
A 		28.1
(-3)
A 		53
C 13.6
(-3)
A 		97.9
(1.8)
A 		19
(-2.7)
A 		119.6
(3)
A 		106
avr 40
(-1.5) 		66
(0.9) 		24.3
(-3) 		87.7
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 60.3
(3)
A 		59.4
(2.9)
A 		30.2
(-0.6)
A 		51.2
(1.9)
A 		45.4
(1.2)
A 		10.5
(-3)
A 		50
B 8.2
(-3)
A 		12.1
(-2.6)
A 		64.6
(2.5)
A 		51.6
(1.2)
A 		9
(-2.9)
A 		69.5
(3)
A 		61
C 4.4
(-3)
A 		39.1
(3)
A 		36.8
(2.6)
A 		13
(-1.5)
A 		35.8
(2.4)
A 		21.6
(-0)
A 		35
avr 24.3
(-3) 		36.9
(0.9) 		43.9
(3) 		38.6
(1.4) 		30.1
(-1.2) 		33.9
(-0.1) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 21.3
(3)
A 		4.2
(-2.3)
A 		1.9
(-3)
A 		16.9
(1.6)
A 		19
B 15.3
(1)
A 		20
(3)
A 		10.9
(-0.9)
A 		6
(-3)
A 		14
C 4.5
(-3)
A 		28.1
(3)
A 		6.6
(-2.5)
A 		20.2
(1)
A 		24
avr 13.7
(1) 		17.4
(3) 		6.5
(-3) 		14.4
(1.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 11.1
(-0.2)
A 		21.1
(3)
A 		6.6
(-1.7)
A 		13
(0.4)
A 		13.7
(0.6)
A 		2.6
(-3)
A 		19
B 2.9
(-3)
A 		4
(-2.7)
A 		15.7
(0.3)
A 		13.7
(-0.2)
A 		3.6
(-2.8)
A 		25.9
(3)
A 		23
C 1.6
(-3)
A 		11.9
(3)
A 		9.4
(1.5)
A 		2.6
(-2.4)
A 		11.6
(2.8)
A 		7.2
(0.3)
A 		10
avr 5.2
(-3) 		12.3
(3) 		10.6
(1.6) 		9.8
(0.9) 		9.6
(0.7) 		11.9
(2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182739_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14558
Sequence Type Exemplar sequence
Representative Public ID F40D4.13 NCBI
Target Description F40D4.13 /REP_DB=WormBase Gene ID /WP=CE19847 /TR=Q9XV33 /GB=CAB04361.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074938 NCBI Caenorhabditis elegans F40D4.13 (F40D4.13) mRNA, complete cds. 11/11 None
SNAP00000026443 ENSEMBL cdna:SNAP chromosome:CEL140:V:17158611:17159832:-1 11/11 None
GENEFINDER00000026455 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17158611:17159832:-1 11/11 None
F40D4.13 ENSEMBL cdna:known chromosome:CEL140:V:17158611:17159832:-1 gene:F40D4.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F40D4.13
Entrez Gene 185531 Entrez gene
SwissProt Q9XV33 EMBL-EBI
WormBase CE19847 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04361 Hypothetical protein F40D4.13 [Caenorhabditis elegans] ref|NP_507339.1| F40D4.13 [Caenorhabditis elegans] 1.0E-163
blast CAA98526 Hypothetical protein T11F9.10 [Caenorhabditis elegans] ref|NP_505914.1| T11F9.10 [Caenorhabditis elegans] 5.0E-83
Sequence
Target Sequence 
>C. ELEGANS:182739_AT
gatcaacggatcactcaagtcgattgtggacggagagaaagcagcgaacaatgcttggcg
agagtctactattgtgatgctgaaaaaagagttgagaaagctggaattggctcggctcga
ggataaggagacccagaaggacaattggtcccgcttccacgagtgggctggcaaattgaa
gaagaacgatgacgtggatactgggaaaactggttcaacttcggatgttccaggactgtt
gaagcgtggaagctctgaaactgtcgacgcagccaaattcggatcgaaaagcgctggaaa
gactcctaaagagaagatcttagctgctcaagcagccaacgaggcaaagaagaagaagcc
agtgatcttcaaatgtgttctatgcgtgaaggatgcacacgagacggaggaatgcacaca
ctacccgaccaaggagagccgcatcgcacgcatggaagcaatgaacctctgccagaaatg
cgtgaaatatcacggaggaagttgccactcgaaggtccagctcaactgctccatttgtcg
cggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAACGGATCACTCAAGTCGATT 429 421 447 Antisense
ACAATGCTTGGCGAGAGTCTACTAT 98 113 494 Antisense
CCGCTTCCACGAGTGGGCTGGCAAA 392 263 597 Antisense
CAACTTCGGATGTTCCAGGACTGTT 290 189 662 Antisense
GCGTGGAAGCTCTGAAACTGTCGAC 62 293 690 Antisense
AACTGTCGACGCAGCCAAATTCGGA 177 143 705 Antisense
CGGAGGAATGCACACACTACCCGAC 521 241 851 Antisense
CCGCATCGCACGCATGGAAGCAATG 2 263 885 Antisense
GGAAGCAATGAACCTCTGCCAGAAA 408 531 900 Antisense
GAGGAAGTTGCCACTCGAAGGTCCA 396 403 941 Antisense
CTCAACTGCTCCATTTGTCGCGGAG 445 227 967 Antisense
Sequence Source Affymetrix Proprietary Database