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[182738_s_at]

Description C34B2.8 /REP_DB=WormBase Gene ID /WP=CE16896 /TR=O44955 /GB=AAB97540.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 50      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 36      6grp_total > 42      4grp_total > 25      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1611
1 2 3 4 range
A 3873.5
(-3)
P 		4188.7
(1.3)
P 		3930.3
(-2.2)
P 		4317.9
(3)
P 		444
B 3166.9
(-3)
P 		3560.9
(-1.5)
P 		3500.8
(-1.8)
P 		4778.2
(3)
P 		1611
C 3526.2
(-3)
P 		4219.6
(2.9)
P 		4234.6
(3)
P 		4001.7
(1)
P 		708
avr 3522.2
(-3) 		3989.7
(0.3) 		3888.6
(-0.4) 		4365.9
(3) 		844

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2476
1 2 3 4 5 6 range
A 3834.3
(-0.5)
P 		4240.3
(0.5)
P 		5151
(3)
P 		4941.2
(2.4)
P 		3442.5
(-1.6)
P 		2921.3
(-3)
P 		2230
B 4369.7
(1.9)
P 		3982.5
(0.6)
P 		4678.8
(2.9)
P 		4251.6
(1.5)
P 		4698.4
(3)
P 		2921.5
(-3)
P 		1777
C 5187.5
(3)
P 		3445.1
(-1.2)
P 		4587.9
(1.5)
P 		4473.6
(1.3)
P 		4503.8
(1.3)
P 		2711.1
(-3)
P 		2476
avr 4463.8
(1.9) 		3889.3
(0.2) 		4805.9
(3) 		4555.5
(2.2) 		4214.9
(1.2) 		2851.3
(-3) 		1955
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 844
1 2 3 4 range
A 1410.3
(3)
P 		909.3
(-0.9)
P 		1027.4
(0)
P 		632.1
(-3)
P 		778
B 1009.9
(2.8)
P 		879.5
(-1)
P 		811.2
(-3)
P 		1018.2
(3)
P 		207
C 1167.3
(0.7)
P 		1213.2
(1)
P 		1475.9
(3)
P 		674.8
(-3)
P 		801
avr 1195.8
(3) 		1000.7
(0.2) 		1104.8
(1.7) 		775
(-3) 		421

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1216
1 2 3 4 5 6 range
A 706.8
(-3)
P 		1508.1
(3)
P 		1121.8
(0.1)
P 		1253.2
(1.1)
P 		1038.8
(-0.5)
P 		711.2
(-3)
P 		801
B 1520.5
(0.2)
P 		1325.6
(-1.3)
P 		1136.2
(-2.7)
P 		1126.1
(-2.7)
P 		1908.9
(3)
P 		1089.4
(-3)
P 		820
C 1922.8
(3)
P 		1051.2
(-2.1)
P 		1167.7
(-1.4)
P 		899.6
(-3)
P 		1457.4
(0.3)
P 		907.5
(-3)
P 		1023
avr 1383.4
(2.1) 		1295
(1.2) 		1141.9
(-0.5) 		1093
(-1) 		1468.4
(3) 		902.7
(-3) 		566
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182738_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.455
Sequence Type Exemplar sequence
Representative Public ID C34B2.8 NCBI
Target Description C34B2.8 /REP_DB=WormBase Gene ID /WP=CE16896 /TR=O44955 /GB=AAB97540.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060398(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060398 NCBI Caenorhabditis elegans C34B2.8 (C34B2.8) mRNA, complete cds. 11/11 None
GENEFINDER00000007258 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10691499:10695174:-1 11/11 None
SNAP00000007248 ENSEMBL cdna:SNAP chromosome:CEL140:I:10694162:10695174:-1 11/11 None
C34B2.8 ENSEMBL cdna:known chromosome:CEL140:I:10693971:10695179:-1 gene:C34B2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10694092-10695105(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34B2.8
Entrez Gene 172969 Entrez gene
SwissProt O44955 EMBL-EBI
WormBase CE16896 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB97539 Hypothetical protein C34B2.7 [Caenorhabditis elegans] ref|NP_492798.1| C34B2.7 [Caenorhabditis elegans] 0.0
blast CAE67342 Hypothetical protein CBG12805 [Caenorhabditis briggsae] 0.0
blast AAB37034 Hypothetical protein C03G5.1 [Caenorhabditis elegans] ref|NP_509446.1| C03G5.1 [Caenorhabditis elegans] sp|Q09508|DHSA_CAEEL Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial precursor (FP) (Flavoprotein subunit of complex II) 0.0
blast AAB97540 Hypothetical protein C34B2.8 [Caenorhabditis elegans] ref|NP_492799.1| C34B2.8 [Caenorhabditis elegans] 1.0E-104
blast CAE67343 Hypothetical protein CBG12806 [Caenorhabditis briggsae] 2.0E-96
blast EAA13833 ENSANGP00000010318 [Anopheles gambiae str. PEST] ref|XP_318689.1| ENSANGP00000010318 [Anopheles gambiae str. PEST] 4.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR009346 EMBL-EBI GRIM-19 2.0E-104
Pfam IPR004112 EMBL-EBI Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal 8.7E-95
Pfam IPR003953 EMBL-EBI Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492799.1 1 30-52
C34B2.8 1 30-52
GENEFINDER00000007258 1 29-51
SNAP00000007248 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:182738_S_AT
ggccactggagcagagtttcggcaggatatgcctccaaaaggaggctatcgtgcattcaa
cttccatcgcacttttccgaagcttgtctggagtcctggaaccgtcgtcgccgccatttt
cggagctactgcctacggagtctatgctgctcttgaaggaaagaagaaggacatcactga
aaagttcgaagatgttgacatcaacaacgcaatggagccgttcttgactgccgagcgtga
cagatattggctcaaattgttggccaagaatcgtgctctggaagaggaaattatgaagga
tgttccaggatggaagactggaacctggtacggagagccagtgtactttactctcggaga
caagtggtgggatccaactgctactgaggtattcgttcactcaaggggatcaaatgaaac
ccgtgatcatctttggcgccaacactctgagtacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCACTGGAGCAGAGTTTCGGCAG 178 543 15 Antisense
CTATCGTGCATTCAACTTCCATCGC 149 225 60 Antisense
CATCGCACTTTTCCGAAGCTTGTCT 689 211 79 Antisense
AGCTACTGCCTACGGAGTCTATGCT 701 77 138 Antisense
GTTCTTGACTGCCGAGCGTGACAGA 406 443 234 Antisense
GTTGGCCAAGAATCGTGCTCTGGAA 432 435 273 Antisense
GCCAGTGTACTTTACTCTCGGAGAC 266 281 351 Antisense
AGTGGTGGGATCCAACTGCTACTGA 296 59 377 Antisense
GGTATTCGTTCACTCAAGGGGATCA 581 505 402 Antisense
TGAAACCCGTGATCATCTTTGGCGC 41 573 429 Antisense
TTTGGCGCCAACACTCTGAGTACGC 46 661 446 Antisense
Sequence Source Affymetrix Proprietary Database