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[182737_s_at] G-protein coupled receptor, srh family

Description Y59A8B.4 /REP_DB=WormBase Gene ID /WP=CE26214 /TR=Q9GRY7 /GB=CAC14412.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 10      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 13.9
(-2.9)
A 		18.8
(-2.6)
A 		13.1
(-3)
A 		101.7
(3)
P 		89
B 27.6
(-0.3)
M 		33.7
(3)
P 		22.6
(-3)
A 		29.5
(0.7)
A 		11
C 2
(-3)
A 		18.5
(-1.9)
A 		9.4
(-2.5)
A 		93.7
(3)
P 		92
avr 14.5
(-3) 		23.7
(-2.1) 		15
(-3) 		75
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 17
(0)
A 		32.2
(3)
A 		20
(0.6)
A 		6.8
(-2)
A 		2.6
(-2.8)
A 		1.6
(-3)
A 		31
B 15
(-0.5)
A 		11.9
(-1.2)
A 		32.8
(3)
A 		9.1
(-1.7)
A 		2.7
(-3)
A 		8.3
(-1.9)
A 		30
C 27.5
(2.2)
P 		31.1
(3)
A 		3.4
(-3)
A 		3.6
(-3)
A 		10.3
(-1.5)
A 		26.6
(2)
A 		28
avr 19.8
(1.4) 		25.1
(3) 		18.7
(1.1) 		6.5
(-2.6) 		5.2
(-3) 		12.2
(-0.9) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 5.1
(-2.1)
A 		4.1
(-2.6)
A 		3.4
(-3)
A 		14.9
(3)
P 		12
B 8.8
(3)
M 		8.3
(2.2)
P 		5.2
(-3)
A 		6.3
(-1.2)
A 		4
C 0.7
(-3)
A 		5.3
(-1.2)
A 		3.3
(-2)
A 		15.8
(3)
P 		15
avr 4.9
(-2.3) 		5.9
(-1.6) 		4
(-3) 		12.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.1
(-1.5)
A 		11.5
(3)
A 		4.4
(-0.8)
A 		1.7
(-2.3)
A 		0.8
(-2.8)
A 		0.4
(-3)
A 		11
B 5.2
(0.6)
A 		3.9
(-0.6)
A 		8
(3)
A 		2.4
(-1.9)
A 		1.1
(-3)
A 		3.1
(-1.3)
A 		7
C 10.2
(3)
P 		9.5
(2.6)
A 		0.9
(-2.9)
A 		0.7
(-3)
A 		3.3
(-1.4)
A 		8.9
(2.2)
A 		10
avr 6.2
(1.1) 		8.3
(3) 		4.4
(-0.5) 		1.6
(-3) 		1.7
(-2.9) 		4.1
(-0.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182737_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14555
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.4 NCBI
Target Description Y59A8B.4 /REP_DB=WormBase Gene ID /WP=CE26214 /TR=Q9GRY7 /GB=CAC14412.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075122(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075122 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-134) (srh-134) mRNA, complete cds. 11/11 A 
Y59A8B.4 ENSEMBL cdna:known chromosome:CEL140:V:18017215:18019900:-1 gene:Y59A8B.4 11/11 A 
Y59A8B.5 ENSEMBL cdna:pseudogene chromosome:CEL140:V:18020478:18022588:-1 gene:Y59A8B.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028733 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18017214-18019900(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-134
Ensembl Y59A8B.4
Y59A8B.5
Entrez Gene 190392 Entrez gene
SwissProt Q9GRY7 EMBL-EBI
WormBase CE26214 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC14412 Hypothetical protein Y59A8B.4 [Caenorhabditis elegans] ref|NP_507523.1| Serpentine Receptor, class H family member (srh-134) [Caenorhabditis elegans] 0.0
blast CAC14413 Hypothetical protein Y59A8B.3 [Caenorhabditis elegans] ref|NP_507522.1| Serpentine Receptor, class H family member (srh-133) [Caenorhabditis elegans] 1.0E-145
blast CAA20969 Hypothetical protein Y102A5C.31 [Caenorhabditis elegans] ref|NP_507302.1| Serpentine Receptor, class H family member (srh-131) [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507523.1 7 20-39,52-74,94-116,136-158,194-216,237-259,274-296
Y59A8B.4 7 20-39,52-74,94-116,136-158,194-216,237-259,274-296
Sequence
Target Sequence 
>C. ELEGANS:182737_S_AT
attgtattacattatacctatgcattttgtttcacacttccattacttttttacccgctc
gatcaggaagaaggacggcgatttgtgaaagaggcacttccttgtgtacctcactctata
atagaccaccccgatttttatctctttatcgataaaccatatatacttgcaatatactat
ggaatgacggcaacagtcttcgaaatagaagcgatctactacttcacacgtactgcatta
tacctttcgagtaacaaagccaaatcgcagaggacttataaacttcaagtacaattcttt
attgcattaacatttcaaattatgattccactgtgtgtattgatattgccaattgtatat
cttatcactgcatttataacaaaacattttgatcagatagccaacaacattgccttaaac
tttcttgcactccacgggttgacctccagtacagttatgctcatagttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTATTACATTATACCTATGCAT 395 5 433 Antisense
ATACCTATGCATTTTGTTTCACACT 147 23 446 Antisense
CTATGCATTTTGTTTCACACTTCCA 137 225 450 Antisense
TTTTTTACCCGCTCGATCAGGAAGA 183 321 479 Antisense
TACCCGCTCGATCAGGAAGAAGGAC 344 595 484 Antisense
GGAAGAAGGACGGCGATTTGTGAAA 375 531 498 Antisense
AGGACGGCGATTTGTGAAAGAGGCA 531 55 504 Antisense
GAAAGAGGCACTTCCTTGTGTACCT 452 359 519 Antisense
TTCCTTGTGTACCTCACTCTATAAT 235 701 530 Antisense
AAACTTCAAGTACAATTCTTTATTG 441 125 712 Antisense
TCCAGTACAGTTATGCTCATAGTTC 47 591 877 Antisense
Sequence Source Affymetrix Proprietary Database