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[182734_at] 7TM chemoreceptor, srw family

Description T05B4.5 /REP_DB=WormBase Gene ID /WP=CE13201 /TR=O16414 /GB=AAC69057.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 20      6grp_cgc > 09      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 33.2
(3)
A 		8.3
(-2.2)
A 		4.3
(-3)
A 		6.9
(-2.5)
A 		29
B 24.1
(-3)
A 		33.5
(-0.6)
A 		36.9
(0.2)
A 		47.8
(3)
P 		24
C 24.5
(-2.2)
A 		42.8
(-0.7)
M 		14
(-3)
A 		89.6
(3)
P 		76
avr 27.3
(-1.2) 		28.2
(-1) 		18.4
(-3) 		48.1
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 47.3
(3)
A 		18.8
(-2.4)
A 		15.8
(-3)
A 		23.1
(-1.6)
A 		44.9
(2.5)
A 		33.7
(0.4)
A 		32
B 31.6
(3)
P 		19.4
(-2.9)
A 		19.1
(-3)
A 		29.4
(1.9)
A 		22
(-1.6)
A 		29
(1.8)
A 		13
C 12.8
(-3)
A 		51.2
(3)
A 		39.2
(1.1)
A 		33
(0.2)
A 		26
(-0.9)
A 		30.8
(-0.2)
A 		38
avr 30.6
(2.4) 		29.8
(1.7) 		24.7
(-3) 		28.5
(0.5) 		31
(2.8) 		31.2
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.1
(3)
A 		1.8
(-2.6)
A 		1.1
(-2.9)
A 		1
(-3)
A 		11
B 7.7
(-3)
A 		8.3
(-1.6)
A 		8.5
(-1.1)
A 		10.2
(3)
P 		3
C 8.1
(-1.1)
A 		12.3
(1.4)
M 		4.9
(-3)
A 		15.1
(3)
P 		10
avr 9.3
(3) 		7.5
(0.6) 		4.8
(-3) 		8.8
(2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.7
(0.1)
A 		6.7
(-1)
A 		3.4
(-3)
A 		5.9
(-1.5)
A 		13.5
(3)
A 		8.2
(-0.1)
A 		10
B 11
(3)
P 		6.4
(-1.3)
A 		4.6
(-3)
A 		7.8
(0)
A 		8.9
(1)
A 		10.8
(2.8)
A 		6
C 4.7
(-3)
A 		15.6
(3)
A 		10
(-0.1)
A 		6.6
(-2)
A 		8.4
(-1)
A 		10.3
(0.1)
A 		11
avr 8.1
(-0.1) 		9.6
(2) 		6
(-3) 		6.8
(-1.9) 		10.3
(3) 		9.8
(2.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182734_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15562
Sequence Type Exemplar sequence
Representative Public ID T05B4.5 NCBI
Target Description T05B4.5 /REP_DB=WormBase Gene ID /WP=CE13201 /TR=O16414 /GB=AAC69057.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071741 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-132) (srw-132) mRNA, complete cds. 11/11 None
GENEFINDER00000031074 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4106186:4109680:-1 11/11 None
T05B4.5 ENSEMBL cdna:known chromosome:CEL140:V:4106186:4107951:-1 gene:T05B4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4106185-4109680(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-132
Ensembl T05B4.5
Entrez Gene 188101 Entrez gene
SwissProt O16414 EMBL-EBI
WormBase CE34987 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69057 Serpentine receptor, class w protein 132 [Caenorhabditis elegans] ref|NP_504142.2| Serpentine Receptor, class W family member (srw-132) [Caenorhabditis elegans] 0.0
blast AAC69057 Serpentine receptor, class w protein 132 [Caenorhabditis elegans] ref|NP_504142.2| Serpentine Receptor, class W family member (srw-132) [Caenorhabditis elegans] 1.0E-173
blast AAC69063 Serpentine receptor, class w protein 133 [Caenorhabditis elegans] ref|NP_504144.2| Serpentine Receptor, class W family member (srw-133) [Caenorhabditis elegans] 1.0E-115
blast AAC69064 Serpentine receptor, class w protein 134 [Caenorhabditis elegans] ref|NP_504143.1| Serpentine Receptor, class W family member (srw-134) [Caenorhabditis elegans] 1.0E-107
blast AAC69063 Serpentine receptor, class w protein 133 [Caenorhabditis elegans] ref|NP_504144.2| Serpentine Receptor, class W family member (srw-133) [Caenorhabditis elegans] 1.0E-103
blast AAC69064 Serpentine receptor, class w protein 134 [Caenorhabditis elegans] ref|NP_504143.1| Serpentine Receptor, class W family member (srw-134) [Caenorhabditis elegans] 3.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504142.2 6 36-58,68-90,158-180,223-245,273-298,313-335
T05B4.5 6 36-58,68-90,158-180,223-245,273-298,313-335
GENEFINDER00000031074 10 45-67,87-109,130-152,172-194,207-229,234-256,297-319,362-384,412-437,452-474
Sequence
Target Sequence 
>C. ELEGANS:182734_AT
tatccggcacttgtactttattctcaattatctatttttttgagaataaaattaaaaaaa
ttggcgttttaccatcagaatgcaattcaaaaggagtggcattctacgggcaagttgtca
ccaatttattttggagaaatgatggatttttattgaaagtttccacgttcacaactgcac
tattttctcatatcatcccctgcatcatctttccattaatcactatagtacttgtaaaag
aaataagaaaagcggaaaaaagaaggaaagtctcaacatctttcaataaaaccaaagatt
atcgaagaacaacacaacttgtcttctataacacaatattcttctttgttgccgagtttc
ctcttggtgtgagcattgcgatcacttggttttttatcgatactcccgggttgcaactca
ttttcctatactgtcgatatcttttttcgatgcttttgactattaacacaagtttccatt
ttgttatttgcatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCGGCACTTGTACTTTATTCTC 305 657 929 Antisense
GGCATTCTACGGGCAAGTTGTCACC 462 537 1026 Antisense
TTTCCACGTTCACAACTGCACTATT 628 667 1088 Antisense
CTGCACTATTTTCTCATATCATCCC 617 237 1103 Antisense
TCATCTTTCCATTAATCACTATAGT 32 621 1133 Antisense
AACACAACTTGTCTTCTATAACACA 166 135 1239 Antisense
GAGCATTGCGATCACTTGGTTTTTT 145 389 1299 Antisense
TTATCGATACTCCCGGGTTGCAACT 479 669 1322 Antisense
GGTTGCAACTCATTTTCCTATACTG 14 509 1337 Antisense
GATATCTTTTTTCGATGCTTTTGAC 459 425 1364 Antisense
GTTTCCATTTTGTTATTTGCATGCT 420 451 1400 Antisense
Sequence Source Affymetrix Proprietary Database