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[182733_at]

Description C31A11.5 /REP_DB=WormBase Gene ID /WP=CE15656 /TR=O45282 /GB=CAB05687.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 66      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_total > 67      4grp_total > 63      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 99
(0.1)
P 		56.3
(-3)
P 		139
(3)
P 		70.9
(-1.9)
P 		83
B 111.4
(3)
P 		104
(2.1)
P 		81.3
(-0.7)
P 		62.6
(-3)
P 		49
C 137
(3)
P 		99.6
(-2.2)
P 		93.9
(-3)
P 		97.6
(-2.5)
P 		43
avr 115.8
(3) 		86.6
(-1.5) 		104.7
(1.3) 		77
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 95.6
(-2.1)
P 		57.3
(-3)
P 		74.3
(-2.6)
P 		76.8
(-2.5)
P 		74
(-2.6)
P 		311.3
(3)
P 		254
B 83.1
(-2.1)
P 		66.9
(-2.5)
P 		96.9
(-1.8)
P 		64.4
(-2.5)
P 		46
(-3)
P 		290.6
(3)
P 		245
C 75.8
(-2.1)
P 		88
(-1.8)
P 		75.1
(-2.1)
P 		45.4
(-3)
A 		46.3
(-3)
P 		255
(3)
P 		210
avr 84.8
(-2.2) 		70.7
(-2.6) 		82.1
(-2.3) 		62.2
(-2.8) 		55.4
(-3) 		285.6
(3) 		230
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 36
(2.9)
P 		12.2
(-2.6)
P 		36.3
(3)
P 		10.4
(-3)
P 		26
B 35.5
(3)
P 		25.7
(0.4)
P 		18.8
(-1.5)
P 		13.3
(-3)
P 		22
C 45.3
(3)
P 		28.6
(-0.5)
P 		32.7
(0.4)
P 		16.5
(-3)
P 		29
avr 38.9
(3) 		22.2
(-0.9) 		29.3
(0.7) 		13.4
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 17.6
(-2.9)
P 		20.4
(-2.6)
P 		16.2
(-3)
P 		19.5
(-2.7)
P 		22.3
(-2.4)
P 		75.8
(3)
P 		60
B 28.9
(-2.2)
P 		22.3
(-2.7)
P 		23.5
(-2.6)
P 		17.1
(-3)
P 		18.7
(-2.9)
P 		108.4
(3)
P 		91
C 28.1
(-1.5)
P 		26.9
(-1.6)
P 		19.1
(-2.2)
P 		9.1
(-3)
A 		15
(-2.5)
P 		85.3
(3)
P 		76
avr 24.9
(-2.2) 		23.2
(-2.4) 		19.6
(-2.6) 		15.2
(-3) 		18.7
(-2.7) 		89.8
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182733_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13767
Sequence Type Exemplar sequence
Representative Public ID C31A11.5 NCBI
Target Description C31A11.5 /REP_DB=WormBase Gene ID /WP=CE15656 /TR=O45282 /GB=CAB05687.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074717(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074717 NCBI Caenorhabditis elegans C31A11.5 (C31A11.5) mRNA, complete cds. 11/11 None
SNAP00000000583 ENSEMBL cdna:SNAP chromosome:CEL140:V:16305568:16308694:1 11/11 None
GENEFINDER00000000589 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16305352:16308694:1 11/11 None
C31A11.5 ENSEMBL cdna:known chromosome:CEL140:V:16305352:16308723:1 gene:C31A11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16305351-16308694(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31A11.5
Entrez Gene 180094 Entrez gene
SwissProt O45282 EMBL-EBI
WormBase CE15656 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624662_AT dm
DROSGENOME1:152289_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05687 Hypothetical protein C31A11.5 [Caenorhabditis elegans] ref|NP_507118.1| C31A11.5 [Caenorhabditis elegans] 0.0
blast CAB07609 Hypothetical protein C31A11.1 [Caenorhabditis elegans] emb|CAB05693.1| Hypothetical protein C31A11.1 [Caenorhabditis elegans] ref|NP_507114.1| C31A11.1 [Caenorhabditis elegans] 0.0
blast CAB07608 Hypothetical protein F28G4.5 [Caenorhabditis elegans] ref|NP_507113.1| F28G4.5 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507118.1 11 192-214,266-285,305-327,348-367,413-435,440-462,482-504,516-538,558-580,593-615,628-650
C31A11.5 11 192-214,266-285,305-327,348-367,413-435,440-462,482-504,516-538,558-580,593-615,628-650
SNAP00000000583 11 166-188,240-259,279-301,322-341,387-409,414-436,456-478,490-512,532-554,567-589,602-624
GENEFINDER00000000589 11 220-242,294-313,333-355,376-395,441-463,468-490,510-532,544-566,586-608,621-643,656-678
Sequence
Target Sequence 
>C. ELEGANS:182733_AT
acttgtcgggtatttacttgcaacttatggaaaaaggaagcttcgattgaattgggcact
tgcagtaactggatggattgtggctttttcattgggagcattgtgtatattctcaactta
tgattacgataataaagttaaatggagtatcttctcccgtgcaacctactacaacttctc
ccgtctggcctggtcttttgcactctcctgggttattgttgctaaccatatgggatgggg
aggccccattgacgccttcatgtcccatccaatgtggcaaccatttggaagactttctta
ttgtgcctacattgttcattacgttgtgttatacatgtacctgatgattggagacgccag
tattcatttttattccagttttcaaattttcatgtattacgctgttccaacaaccgtact
gtcctatatttttgcatttttctggagttgcctattcgaaattccatttttaaaactcga
aaaaatgctgatcgaattgataattggaggagccagagatcggaatcgggaagatattga
gaagcagaagacacttcttaaaaccaaagagaatgagttgtgggctgtggaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGTCGGGTATTTACTTGCAACT 484 103 1506 Antisense
TGGATTGTGGCTTTTTCATTGGGAG 284 551 1579 Antisense
GGAGCATTGTGTATATTCTCAACTT 60 521 1600 Antisense
ACGTTGTGTTATACATGTACCTGAT 658 93 1826 Antisense
ATGTACCTGATGATTGGAGACGCCA 255 47 1840 Antisense
GGAGACGCCAGTATTCATTTTTATT 158 519 1855 Antisense
ATTACGCTGTTCCAACAACCGTACT 246 13 1901 Antisense
AACCGTACTGTCCTATATTTTTGCA 483 145 1917 Antisense
ATTTTTCTGGAGTTGCCTATTCGAA 460 15 1941 Antisense
GGAGGAGCCAGAGATCGGAATCGGG 358 513 2011 Antisense
GAATGAGTTGTGGGCTGTGGAAGAA 23 333 2076 Antisense
Sequence Source Affymetrix Proprietary Database