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[182732_at] 7TM chemoreceptor, sre family

Description F37B4.9 /REP_DB=WormBase Gene ID /WP=CE17798 /TR=O45169 /GB=AAK18942.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 18      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 4.6
(-2.9)
A 		4.4
(-2.9)
A 		3.7
(-3)
A 		50.7
(3)
A 		47
B 8.4
(-2.4)
A 		41.4
(3)
A 		4.5
(-3)
A 		30
(1.1)
A 		37
C 14.4
(-2.6)
A 		32.4
(-1.8)
A 		4.3
(-3)
A 		150.3
(3)
A 		146
avr 9.1
(-2.6) 		26.1
(-1.2) 		4.2
(-3) 		77
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 4.3
(-2.8)
A 		3.6
(-2.9)
A 		38.9
(3)
A 		2.9
(-3)
A 		9.1
(-2)
A 		6.1
(-2.5)
A 		36
B 15.8
(0)
A 		7.6
(-1.9)
A 		3.8
(-2.9)
A 		7.9
(-1.9)
A 		28.1
(3)
A 		3.2
(-3)
A 		25
C 5.7
(-2.3)
A 		38.1
(3)
A 		3.8
(-2.6)
A 		8.1
(-1.9)
A 		2.6
(-2.8)
A 		1.5
(-3)
A 		37
avr 8.6
(-0.7) 		16.4
(3) 		15.5
(2.6) 		6.3
(-1.7) 		13.3
(1.5) 		3.6
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 1.7
(-2.3)
A 		1
(-3)
A 		1
(-3)
A 		7.4
(3)
A 		6
B 2.7
(-1.9)
A 		10.2
(3)
A 		1
(-3)
A 		6.4
(0.5)
A 		9
C 4.8
(-2.2)
A 		9.3
(-1)
A 		1.5
(-3)
A 		25.3
(3)
A 		24
avr 3.1
(-2) 		6.8
(-0.2) 		1.2
(-3) 		13
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		1.3
(-2.5)
A 		8.5
(3)
A 		0.7
(-3)
A 		2.7
(-1.5)
A 		1.5
(-2.4)
A 		8
B 5.5
(-0.4)
A 		2.5
(-2.1)
A 		0.9
(-3)
A 		2.1
(-2.3)
A 		11.4
(3)
A 		1.2
(-2.8)
A 		11
C 2.1
(-2.1)
A 		11.6
(3)
A 		1
(-2.7)
A 		1.6
(-2.4)
A 		0.8
(-2.8)
A 		0.5
(-3)
A 		11
avr 2.8
(-0.5) 		5.1
(3) 		3.5
(0.6) 		1.5
(-2.4) 		5
(2.9) 		1.1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182732_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15045
Sequence Type Exemplar sequence
Representative Public ID F37B4.9 NCBI
Target Description F37B4.9 /REP_DB=WormBase Gene ID /WP=CE17798 /TR=O45169 /GB=AAK18942.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071383(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071383 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-24) (sre-24) mRNA, complete cds. 11/11 None
F37B4.9 ENSEMBL cdna:known chromosome:CEL140:V:2884538:2886252:1 gene:F37B4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2884537-2886252(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-24
Ensembl F37B4.9
Entrez Gene 185415 Entrez gene
SwissProt O45169 EMBL-EBI
WormBase CE17798 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18942 Serpentine receptor, class e (epsilon) protein 24 [Caenorhabditis elegans] ref|NP_503784.1| Serpentine Receptor, class E (epsilon) family member (sre-24) [Caenorhabditis elegans] 0.0
blast CAA19546 Hypothetical protein Y57A10C.4 [Caenorhabditis elegans] ref|NP_496637.1| Serpentine Receptor, class E (epsilon) family member (sre-26) [Caenorhabditis elegans] sp|O62489|SRE26_CAEEL Serpentine receptor class epsilon-26 (Protein sre-26) 7.0E-95
blast T27201 hypothetical protein Y57A10C.5 - Caenorhabditis elegans 5.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503784.1 7 25-44,57-79,118-140,161-183,193-212,253-275,280-302
F37B4.9 7 25-44,57-79,118-140,161-183,193-212,253-275,280-302
Sequence
Target Sequence 
>C. ELEGANS:182732_AT
gtggctattatcacaatgtcccaattttttgcaatatctctaaccgttcttctgatttcc
aatatttttccaaaacttgtgctaacacttccctgggtggcttgttttgtcgtatccata
tttatgtatttttatataagggagataaatacaaaatggcttcaagagatggagaatcct
cggaggacaagagtttttacagtttctcaaagattccaagttaaggagaatctgaaagca
gtttacctcagtgaacgtatagtagcatcggttctcggttcccttttattatttggaagt
ggtttattggcactatcttttaatttgctctcgccatttacagtccatataggagaaaat
atgatgttttgctatccattgctaattatgccattaatagtgtttgggatacctgcttgg
aaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCTATTATCACAATGTCCCAAT 624 491 508 Antisense
TTTGCAATATCTCTAACCGTTCTTC 549 665 535 Antisense
AACCGTTCTTCTGATTTCCAATATT 607 145 549 Antisense
ACACTTCCCTGGGTGGCTTGTTTTG 700 107 592 Antisense
GGCTTGTTTTGTCGTATCCATATTT 505 537 606 Antisense
GAAAGCAGTTTACCTCAGTGAACGT 38 361 741 Antisense
TATAGTAGCATCGGTTCTCGGTTCC 385 661 765 Antisense
CTATCTTTTAATTTGCTCTCGCCAT 69 225 820 Antisense
CTCTCGCCATTTACAGTCCATATAG 500 231 835 Antisense
GATGTTTTGCTATCCATTGCTAATT 663 409 870 Antisense
AGTGTTTGGGATACCTGCTTGGAAA 380 59 906 Antisense
Sequence Source Affymetrix Proprietary Database