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[182731_s_at]

Description H03A11.1 /REP_DB=WormBase Gene ID /WP=CE18799 /TR=Q9XTW2 /GB=CAB07528.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 09      4grp_high_8_8 > 11      6grp_highest_nonorm > 81      6grp_total > 03      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 389.3
(0.3)
P 		276.5
(-1.9)
P 		218.7
(-3)
P 		532.3
(3)
P 		314
B 303.8
(3)
P 		235
(-2.1)
A 		223
(-3)
P 		301.6
(2.8)
P 		81
C 274.1
(0.3)
P 		207.3
(-3)
P 		242.6
(-1.3)
P 		330
(3)
P 		123
avr 322.4
(0.5) 		239.6
(-2.6) 		228.1
(-3) 		388
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 278.5
(0.3)
P 		313.4
(2)
P 		262.9
(-0.4)
P 		207.7
(-3)
P 		335.7
(3)
P 		238.5
(-1.6)
P 		128
B 262.5
(0.5)
P 		260.3
(0.4)
P 		172.2
(-2.8)
P 		329.4
(3)
P 		240
(-0.3)
P 		167.4
(-3)
P 		162
C 298.4
(1.7)
P 		323.5
(2.9)
P 		203
(-3)
P 		325
(3)
P 		202.6
(-3)
P 		207.5
(-2.8)
P 		122
avr 279.8
(1.8) 		299.1
(3) 		212.7
(-2.5) 		287.4
(2.3) 		259.4
(0.5) 		204.5
(-3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 141.7
(3)
P 		60
(-2.8)
P 		57.2
(-3)
P 		77.9
(-1.5)
P 		85
B 96.9
(3)
P 		58
(-2.2)
A 		51.7
(-3)
P 		64.3
(-1.3)
P 		45
C 90.7
(3)
P 		59.6
(-2.3)
P 		84.5
(1.9)
P 		55.6
(-3)
P 		35
avr 109.8
(3) 		59.2
(-3) 		64.5
(-2.4) 		65.9
(-2.2) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 51.3
(-3)
P 		111.4
(3)
P 		57.3
(-2.4)
P 		52.7
(-2.9)
P 		101.3
(2)
P 		58.1
(-2.3)
P 		60
B 91.3
(2.3)
P 		86.6
(1.8)
P 		41.8
(-3)
P 		87.2
(1.9)
P 		97.5
(3)
P 		62.4
(-0.8)
P 		56
C 110.6
(3)
P 		98.7
(1.8)
P 		51.7
(-3)
P 		65.3
(-1.6)
P 		65.6
(-1.6)
P 		69.5
(-1.2)
P 		59
avr 84.4
(1.2) 		98.9
(3) 		50.3
(-3) 		68.4
(-0.8) 		88.1
(1.7) 		63.3
(-1.4) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182731_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17629
Sequence Type Exemplar sequence
Representative Public ID H03A11.1 NCBI
Target Description H03A11.1 /REP_DB=WormBase Gene ID /WP=CE18799 /TR=Q9XTW2 /GB=CAB07528.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078126(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078126 NCBI Caenorhabditis elegans H03A11.1 (H03A11.1) mRNA, complete cds. 11/11 None
SNAP00000032685 ENSEMBL cdna:SNAP chromosome:CEL140:X:15209748:15213094:-1 11/11 None
GENEFINDER00000032687 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15209748:15213528:-1 11/11 None
H03A11.1 ENSEMBL cdna:known chromosome:CEL140:X:15209219:15213176:-1 gene:H03A11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15209747-15213094(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H03A11.1
Entrez Gene 181616 Entrez gene
SwissProt Q9XTW2 EMBL-EBI
WormBase CE18799 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585669_AT similar to family with sequence similarity 20, member C cfa
CANINE_2:CFA.4660.1.A1_AT similar to family with sequence similarity 20, member C cfa
CANINE_2:CFAAFFX.17428.1.S1_AT similar to family with sequence similarity 20, member C cfa
DROSOPHILA_2:1637830_S_AT dm
DROSGENOME1:150461_AT dm
DROSGENOME1:150460_AT dm
DROSGENOME1:150459_AT dm
CHICKEN:GGA.12092.1.S1_AT family with sequence similarity 20, member C gga
U133_X3P:HS.134742.0.S1_3P_AT family with sequence similarity 20, member C hs
HG-U133_PLUS_2:226722_AT family with sequence similarity 20, member C hs
HG-U133B:226722_AT family with sequence similarity 20, member C hs
HG-U95E:72964_AT family with sequence similarity 20, member C hs
HG-U95E:90257_AT family with sequence similarity 20, member C hs
U133_X3P:HS.179769.0.S1_3P_X_AT Family with sequence similarity 20, member C hs
U133_X3P:HS.179769.0.S1_3P_S_AT Family with sequence similarity 20, member C hs
U133_X3P:HS.179769.0.S1_3P_AT Family with sequence similarity 20, member C hs
U133_X3P:229438_3P_AT Family with sequence similarity 20, member C hs
HG-U133_PLUS_2:229438_AT Family with sequence similarity 20, member C hs
HG-U133B:229438_AT Family with sequence similarity 20, member C hs
HG-U95E:67069_AT Family with sequence similarity 20, member C hs
HG-U95E:72673_R_AT Family with sequence similarity 20, member C hs
MU11KSUBA:C76981_RC_S_AT cDNA sequence BC004044 mm
MG-U74AV2:100949_AT cDNA sequence BC004044 mm
MOE430A:1417688_AT cDNA sequence BC004044 mm
MOUSE430A_2:1417688_AT cDNA sequence BC004044 mm
MOUSE430_2:1417688_AT cDNA sequence BC004044 mm
MOE430B:1457648_X_AT cDNA sequence BC004044 mm
MOUSE430_2:1457648_X_AT cDNA sequence BC004044 mm
MOE430B:1443827_X_AT cDNA sequence BC004044 mm
MOUSE430_2:1443827_X_AT cDNA sequence BC004044 mm
MU19KSUBA:TC20086_AT CDNA sequence BC004044, mRNA (cDNA clone MGC:37799 IMAGE:5097853) mm
Protein Similarities
Method ID Description E-Value
blast CAB07528 Hypothetical protein H03A11.1 [Caenorhabditis elegans] ref|NP_510527.1| H03A11.1 [Caenorhabditis elegans] 0.0
blast CAE63288 Hypothetical protein CBG07668 [Caenorhabditis briggsae] 0.0
blast XP_393996 PREDICTED: similar to ENSANGP00000018734 [Apis mellifera] 1.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR009581 EMBL-EBI Protein of unknown function DUF1193 1.0E-126
Pfam IPR009581 EMBL-EBI Protein of unknown function DUF1193 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510527.1 1 7-26
H03A11.1 1 7-26
SNAP00000032685 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:182731_S_AT
gtccgtatagacgaacctactcgaaaaagaatcaagtagctgaatggcagtcgagtatga
attattgcacggataaggtgaaaaccaagcgacaatatgctcatggaagaaggttacttg
atctggttgatattcatattttggattatttaataggaaaccaagaccgtcatcacttcg
aatccttcaacgtgttcaacgatcttccttcctatgcgatccatctcgaccatggtcgag
catttggcagatctgactttgacgatgacgacatcattctcccgctccgacaatgctgca
tcctacgtccatccactttccagacccttatgaatttctacagtacaccaaagtcactga
cgaaagccctacacgagtcattatcgaaagatccagcccatccgattttggcttataagc
attatccggcaatggaaaggcggttagcaaaaattatgtctcacatactggaatgcttcg
aaagccggggagttgccgaagttctagttgccgagtacaacaaccccgatgtctcagacg
ccgagcaaaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCGTATAGACGAACCTACTCGAA 268 477 944 Antisense
GGAAACCAAGACCGTCATCACTTCG 535 527 1099 Antisense
CAACGTGTTCAACGATCTTCCTTCC 316 187 1131 Antisense
ATGGTCGAGCATTTGGCAGATCTGA 405 51 1175 Antisense
TGACGATGACGACATCATTCTCCCG 247 571 1203 Antisense
TCCACTTTCCAGACCCTTATGAATT 244 589 1255 Antisense
AAAGTCACTGACGAAAGCCCTACAC 588 119 1293 Antisense
CGAAAGCCCTACACGAGTCATTATC 10 241 1304 Antisense
ATCCAGCCCATCCGATTTTGGCTTA 591 39 1334 Antisense
GCCGAAGTTCTAGTTGCCGAGTACA 496 283 1438 Antisense
GATGTCTCAGACGCCGAGCAAAACG 101 409 1471 Antisense
Sequence Source Affymetrix Proprietary Database