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[182729_at]

Description D1007.8 /REP_DB=WormBase Gene ID /WP=CE23618 /TR=Q9TXQ8 /GB=AAK18914.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 48      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 137.5
(-3)
A 		155.2
(-1.4)
A 		203.4
(3)
M 		178.1
(0.7)
A 		66
B 83.2
(-3)
A 		186.8
(3)
P 		163.5
(1.7)
P 		93.9
(-2.4)
A 		104
C 110.2
(-3)
A 		132.8
(-1.9)
M 		230
(3)
P 		127.7
(-2.1)
A 		120
avr 110.3
(-3) 		158.3
(0.2) 		199
(3) 		133.2
(-1.5) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 150.1
(-1.9)
A 		184.3
(-1.2)
P 		103.1
(-3)
M 		199.1
(-0.8)
P 		366.7
(3)
P 		301.2
(1.5)
P 		264
B 123
(-2.5)
A 		154.1
(-2)
A 		96.3
(-3)
A 		194.8
(-1.3)
M 		405.5
(2.4)
P 		439.4
(3)
P 		343
C 139.3
(-3)
P 		159.7
(-2.4)
A 		184.8
(-1.6)
A 		196.9
(-1.2)
P 		318.5
(2.6)
P 		331.2
(3)
P 		192
avr 137.5
(-2.8) 		166
(-2) 		128.1
(-3) 		196.9
(-1.2) 		363.6
(3) 		357.3
(2.8) 		236
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 50.1
(2.3)
A 		33.7
(-1.3)
A 		53.2
(3)
M 		26.1
(-3)
A 		27
B 26.5
(-1.5)
A 		46.1
(3)
P 		37.9
(1.1)
P 		20
(-3)
A 		26
C 36.5
(-1.5)
A 		38.2
(-1.3)
M 		80.1
(3)
P 		21.5
(-3)
A 		59
avr 37.7
(-0.4) 		39.3
(-0.1) 		57.1
(3) 		22.5
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 27.7
(-2.6)
A 		65.6
(-0.1)
P 		22.5
(-3)
M 		50.5
(-1.1)
P 		110.6
(3)
P 		73.3
(0.5)
P 		88
B 42.8
(-2.2)
A 		51.3
(-1.8)
A 		23.4
(-3)
A 		51.6
(-1.8)
M 		164.8
(3)
P 		163.8
(3)
P 		141
C 51.6
(-2)
P 		48.7
(-2.2)
A 		47
(-2.4)
A 		39.6
(-3)
P 		103.1
(2.3)
P 		110.9
(3)
P 		71
avr 40.7
(-2.4) 		55.2
(-1.5) 		31
(-3) 		47.2
(-2) 		126.2
(3) 		116
(2.4) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.431
Sequence Type Exemplar sequence
Representative Public ID D1007.8 NCBI
Target Description D1007.8 /REP_DB=WormBase Gene ID /WP=CE23618 /TR=Q9TXQ8 /GB=AAK18914.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059004(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059004 NCBI Caenorhabditis elegans D1007.8 (D1007.8) mRNA, complete cds. 10/11 None
GENEFINDER00000011308 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4604404:4605278:1 10/11 None
D1007.8 ENSEMBL cdna:known chromosome:CEL140:I:4604404:4605320:1 gene:D1007.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011287 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4604403-4605278(+) 94.68 100.0
Public Domain and Genome References
Gene Title
Ensembl D1007.8
Entrez Gene 172066 Entrez gene
SwissProt Q9TXQ8 EMBL-EBI
WormBase CE36119 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18914 Hypothetical protein D1007.8 [Caenorhabditis elegans] ref|NP_491405.2| D1007.8 [Caenorhabditis elegans] 1.0E-117
blast G87757 protein D1007.8 [imported] - Caenorhabditis elegans 1.0E-111
blast CAE74514 Hypothetical protein CBG22268 [Caenorhabditis briggsae] 2.0E-39
Sequence
Target Sequence 
>C. ELEGANS:182729_AT
tggttcaaaaaatcctcaccgcttctttcaccgaagaatctgccaagaagttcaacgtcg
gggaccgtgttgaagtattcggaaaagttcgaattttggagaatggaaagaagtttttga
acgcattttcgatgcacaaagcttcagatgaacaattcgccgcttttcaaataatctgcc
gtttttcagagaagttctataaaaaggcaagtttcacaggcgccagcaccaatgttccta
ctcgtttcggtttgaagaacaaagtgggaagtttgaatcggttcccaatgggaatgctgg
aacaatcatcttcttgcgaaaataatatgggagtgtggccaacggaaattgaacaattgg
cagcaggaatatcgacaagtggacttgttaaagaagaatcagatgtatctgaggatagca
gtgatgattcggatgaagaggatgaggaggaagaagaagaagatgatgaggaagattcat
ttgataaaggaccagtgagccttgtgccaatggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTTCAAAAAATCCTCACCGCTTC 571 551 209 Antisense
CACCGCTTCTTTCACCGAAGAATCT 668 199 225 Antisense
GTCGGGGACCGTGTTGAAGTATTCG 51 3 265 Antisense
GCATTTTCGATGCACAAAGCTTCAG 136 309 331 Antisense
TCAGATGAACAATTCGCCGCTTTTC 114 623 352 Antisense
GCCGCTTTTCAAATAATCTGCCGTT 419 285 367 Antisense
AAAGGCAAGTTTCACAGGCGCCAGC 488 113 411 Antisense
TGTTCCTACTCGTTTCGGTTTGAAG 224 561 441 Antisense
GAAGTTTGAATCGGTTCCCAATGGG 26 337 476 Antisense
GCTGGAACAATCATCTTCTTGCGAA 154 295 504 Antisense
GACCAGTGAGCCTTGTGCCAATGGC 656 383 698 Antisense
Sequence Source Affymetrix Proprietary Database