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[182726_s_at] 7TM receptor, srbc family /// 7TM receptor, srbc family

Description F08E10.2 /REP_DB=WormBase Gene ID /WP=CE18572 /TR=Q9XXP2 /GB=CAA16502.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 02      6grp_cgc > 90      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 1.7
(-2.9)
A 		0.7
(-3)
A 		3.6
(-2.7)
A 		58
(3)
P 		57
B 0.8
(-3)
A 		14.6
(-0.1)
A 		4.1
(-2.3)
A 		28.9
(3)
A 		28
C 11.1
(-2.3)
A 		2.7
(-3)
A 		9.5
(-2.4)
A 		75.2
(3)
P 		73
avr 4.5
(-3) 		6
(-2.8) 		5.7
(-2.9) 		54
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 27.5
(1.2)
A 		1.4
(-3)
A 		38.6
(3)
A 		3.6
(-2.6)
A 		27.8
(1.3)
A 		2.7
(-2.8)
A 		37
B 5.5
(-1.5)
A 		20.9
(3)
A 		4
(-2)
A 		7
(-1.1)
A 		1.3
(-2.8)
A 		0.5
(-3)
A 		20
C 0.7
(-3)
A 		1.3
(-2.5)
A 		1.6
(-2.3)
A 		2.5
(-1.5)
A 		1.3
(-2.5)
A 		8
(3)
A 		7
avr 11.2
(1.1) 		7.9
(-0.7) 		14.7
(3) 		4.4
(-2.6) 		10.1
(0.5) 		3.7
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.6
(-2.7)
A 		0.2
(-3)
A 		0.9
(-2.5)
A 		8.5
(3)
P 		8
B 0.3
(-3)
A 		3.6
(0.4)
A 		0.9
(-2.4)
A 		6.2
(3)
A 		6
C 3.7
(-1.5)
A 		0.8
(-3)
A 		3.3
(-1.7)
A 		12.7
(3)
P 		12
avr 1.5
(-3) 		1.5
(-3) 		1.7
(-2.8) 		9.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 5.1
(0.5)
A 		0.5
(-3)
A 		8.4
(3)
A 		0.9
(-2.7)
A 		8.4
(3)
A 		0.7
(-2.8)
A 		8
B 1.9
(-1.5)
A 		6.9
(3)
A 		1
(-2.3)
A 		1.9
(-1.5)
A 		0.5
(-2.7)
A 		0.2
(-3)
A 		7
C 0.2
(-3)
A 		0.4
(-2.5)
A 		0.4
(-2.5)
A 		0.5
(-2.3)
A 		0.4
(-2.5)
A 		2.7
(3)
A 		3
avr 2.4
(0.5) 		2.6
(1.1) 		3.3
(3) 		1.1
(-3) 		3.1
(2.5) 		1.2
(-2.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182726_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14503
Sequence Type Exemplar sequence
Representative Public ID F08E10.2 NCBI
Target Description F08E10.2 /REP_DB=WormBase Gene ID /WP=CE18572 /TR=Q9XXP2 /GB=CAA16502.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075024(11), NM_074959(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075024 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-61) (srbc-61) mRNA, complete cds. 11/11 A 
NM_074959 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-62) (srbc-62) mRNA, complete cds. 11/11 A 
SNAP00000039051 ENSEMBL cdna:SNAP chromosome:CEL140:V:17477411:17480684:1 10/11 None
T19C9.1 ENSEMBL cdna:known chromosome:CEL140:V:17220567:17221581:1 gene:T19C9.1 11/11 A 
F08E10.2 ENSEMBL cdna:known chromosome:CEL140:V:17479366:17480684:1 gene:F08E10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17479365-17480684(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
7TM receptor, srbc family
Gene Symbol srbc-61
srbc-62
Ensembl T19C9.1
F08E10.2
Entrez Gene 184183 Entrez gene
188596 Entrez gene
SwissProt Q9XXP2 EMBL-EBI
O45789 EMBL-EBI
WormBase CE18572 Wormbase
CE16418 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16502 Hypothetical protein F08E10.2 [Caenorhabditis elegans] ref|NP_507425.1| Serpentine Receptor, class BC (class B-like) family member (srbc-61) [Caenorhabditis elegans] 1.0E-141
blast CAB07483 Hypothetical protein T19C9.1 [Caenorhabditis elegans] ref|NP_507360.1| Serpentine Receptor, class BC (class B-like) family member (srbc-62) [Caenorhabditis elegans] 1.0E-141
blast CAB07483 Hypothetical protein T19C9.1 [Caenorhabditis elegans] ref|NP_507360.1| Serpentine Receptor, class BC (class B-like) family member (srbc-62) [Caenorhabditis elegans] 1.0E-126
blast CAA16502 Hypothetical protein F08E10.2 [Caenorhabditis elegans] ref|NP_507425.1| Serpentine Receptor, class BC (class B-like) family member (srbc-61) [Caenorhabditis elegans] 1.0E-126
blast CAA16499 Hypothetical protein F08E10.3 [Caenorhabditis elegans] ref|NP_507424.1| Serpentine Receptor, class H family member (srh-123) [Caenorhabditis elegans] 8.0E-94
blast CAA16502 Hypothetical protein F08E10.2 [Caenorhabditis elegans] ref|NP_507425.1| Serpentine Receptor, class BC (class B-like) family member (srbc-61) [Caenorhabditis elegans] 5.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 8.5E-110
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.4E-104
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.3E-78
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 8.9E-52
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.6E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507425.1 7 10-32,45-67,82-104,128-150,181-203,215-237,247-269
NP_507360.1 7 10-32,45-67,82-104,128-150,178-195,215-237,247-269
T19C9.1 7 10-32,45-67,82-104,128-150,178-195,215-237,247-269
F08E10.2 7 10-32,45-67,82-104,128-150,181-203,215-237,247-269
SNAP00000039051 7 60-82,102-124,134-156,163-183,198-220,244-266,294-313
Sequence
Target Sequence 
>C. ELEGANS:182726_S_AT
ccgctaacctattagtaactattcgcccgattctggtgtttgtaatcaacctggacagaa
tctttgccacctatttcccaattttatatcacaaccatcgtcacaaaatttcgatacgcg
cgattttatcattctttcttggttgttcacttgtccatcaatatattctcttcggatact
gtggcgttgtggtagatgttccactggactgtgatcatttcaagtgcactgtgaacgcgt
gtttttatagttatacattgtcagtagagaaatacacagattccttgattttagtctcgt
tagttatcttatcttgtcggtttgtaatttggaattattctctaggagcgcaaagtaatt
cactgtttacaaaagcaactcgaattgcactcatcgactcaattatcatattcatattca
gttttcttccttcagcaatttcccagcaattcccaagtatcaatttcgaaacggttggcc
caataatgacaatgttcaagaatatcggattgttcatcgaagcactaattgtgttcaaag
tactgtccaaggaagcgattgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCTAACCTATTAGTAACTATTCG 456 261 272 Antisense
GGATACTGTGGCGTTGTGGTAGATG 700 509 445 Antisense
GGACTGTGATCATTTCAAGTGCACT 290 525 477 Antisense
AGTGCACTGTGAACGCGTGTTTTTA 175 61 494 Antisense
GAACGCGTGTTTTTATAGTTATACA 510 347 504 Antisense
CAGATTCCTTGATTTTAGTCTCGTT 317 207 548 Antisense
CACTCATCGACTCAATTATCATATT 13 199 659 Antisense
ATATCGGATTGTTCATCGAAGCACT 311 21 773 Antisense
GTTCATCGAAGCACTAATTGTGTTC 282 445 783 Antisense
AATTGTGTTCAAAGTACTGTCCAAG 179 179 798 Antisense
AGTACTGTCCAAGGAAGCGATTGTG 438 61 810 Antisense
Sequence Source Affymetrix Proprietary Database