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[182724_at]

Description C50C10.4 /REP_DB=WormBase Gene ID /WP=CE05462 /TR=Q18731 /GB=CAA96610.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 09      6grp_cgc > 19      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 19.4
(-3)
A 		33.5
(-2.2)
P 		46.2
(-1.4)
A 		122.8
(3)
P 		103
B 12.2
(-3)
A 		13
(-3)
A 		47.5
(-1)
A 		118.3
(3)
P 		106
C 6.1
(-3)
A 		33.9
(-1.7)
A 		15.4
(-2.6)
A 		134.6
(3)
P 		129
avr 12.6
(-3) 		26.8
(-2.2) 		36.4
(-1.7) 		125.2
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 52.1
(2.6)
A 		50.3
(2.3)
M 		18.8
(-3)
A 		20.8
(-2.7)
A 		54.8
(3)
P 		30.6
(-1)
A 		36
B 37
(-1)
P 		28.4
(-3)
P 		34.8
(-1.5)
A 		51.1
(2.2)
P 		54.5
(3)
P 		54.6
(3)
P 		26
C 34
(-1.6)
P 		77.1
(3)
P 		41.4
(-0.8)
A 		37.1
(-1.3)
A 		21
(-3)
A 		48.9
(-0)
P 		56
avr 41
(-0.2) 		51.9
(3) 		31.7
(-3) 		36.3
(-1.6) 		43.4
(0.5) 		44.7
(0.9) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 7.1
(-3)
A 		7.3
(-2.9)
P 		12.1
(-0.2)
A 		18
(3)
P 		11
B 3.9
(-2.8)
A 		3.2
(-3)
A 		11
(-0.9)
A 		25.2
(3)
P 		22
C 2
(-3)
A 		9.7
(-0.8)
A 		5.4
(-2)
A 		22.7
(3)
P 		21
avr 4.3
(-3) 		6.7
(-2.2) 		9.5
(-1.2) 		22
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9.6
(-0.6)
A 		17.9
(3)
M 		4.1
(-3)
A 		5.3
(-2.5)
A 		16.5
(2.4)
P 		7.4
(-1.6)
A 		14
B 12.9
(-1)
P 		9.5
(-2.5)
P 		8.4
(-3)
A 		13.5
(-0.8)
P 		22.2
(3)
P 		20.4
(2.2)
P 		14
C 12.6
(-0.9)
P 		23.5
(3)
P 		10.5
(-1.7)
A 		7.5
(-2.7)
A 		6.8
(-3)
A 		16.4
(0.4)
P 		17
avr 11.7
(-0.4) 		17
(3) 		7.7
(-3) 		8.8
(-2.3) 		15.2
(1.8) 		14.7
(1.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182724_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11711
Sequence Type Exemplar sequence
Representative Public ID C50C10.4 NCBI
Target Description C50C10.4 /REP_DB=WormBase Gene ID /WP=CE05462 /TR=Q18731 /GB=CAA96610.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073133(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073133 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-31) (sru-31) mRNA, complete cds. 11/11 None
GENEFINDER00000003338 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9819272:9822721:1 11/11 None
C50C10.4 ENSEMBL cdna:known chromosome:CEL140:V:9819272:9820444:1 gene:C50C10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003331 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9819271-9820444(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-31
Ensembl C50C10.4
Entrez Gene 183647 Entrez gene
SwissProt Q18731 EMBL-EBI
WormBase CE05462 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96610 Hypothetical protein C50C10.4 [Caenorhabditis elegans] ref|NP_505534.1| Serpentine Receptor, class U family member (sru-31) [Caenorhabditis elegans] 1.0E-173
blast CAA96610 Hypothetical protein C50C10.4 [Caenorhabditis elegans] ref|NP_505534.1| Serpentine Receptor, class U family member (sru-31) [Caenorhabditis elegans] 1.0E-171
blast CAA96608 Hypothetical protein C50C10.2 [Caenorhabditis elegans] ref|NP_505532.1| Serpentine Receptor, class U family member (sru-29) [Caenorhabditis elegans] 1.0E-119
blast CAA96608 Hypothetical protein C50C10.2 [Caenorhabditis elegans] ref|NP_505532.1| Serpentine Receptor, class U family member (sru-29) [Caenorhabditis elegans] 1.0E-118
blast T20104 hypothetical protein C50C10.5 - Caenorhabditis elegans 1.0E-116
blast CAE72260 Hypothetical protein CBG19379 [Caenorhabditis briggsae] 4.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 3.9E-20
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 9.0E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505534.1 6 30-52,69-91,111-133,153-175,207-229,254-276
C50C10.4 6 30-52,69-91,111-133,153-175,207-229,254-276
GENEFINDER00000003338 11 30-52,69-91,111-133,153-175,207-229,254-276,370-392,412-434,454-476,501-523,543-562
Sequence
Target Sequence 
>C. ELEGANS:182724_AT
gtccccacgacatcacgaaaggtactgtcagcttattatgtacagatttgctattccatt
tttgtttcttgccccatttgctttatccatattcaatataactggcgttggattttgcaa
acaattagatgaaccattcagttttggatctttgattctttttgaaggagagcaatatgc
aaaaattaattcggttattcaactaattttttcaagttccatcttctttttcaacttttc
aatgagtgcatttatgttctataaacttcgtcgcacgcaagccgagtctgtgtctgtaag
gacaagagaattgacaagaaaagctgaattttcattgttcttggcagttgcgtcaagtgt
ggttccaataattacaaactcgatttgttcgatcacatttttattcaaccgtccatattg
gtatcatgttttgtttcttcgtccaataggcaatgattatgagactgttatgatgccatg
ggttctatatctaacacatccaatgtttggaccaaagaaacagcaacttaaacctagcgg
tgcatcaagcgttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCCCACGACATCACGAAAGGTAC 239 475 438 Antisense
CCCCATTTGCTTTATCCATATTCAA 151 261 509 Antisense
TTCAAGTTCCATCTTCTTTTTCAAC 519 685 648 Antisense
TGTTCTATAAACTTCGTCGCACGCA 35 563 692 Antisense
GCAAGCCGAGTCTGTGTCTGTAAGG 44 321 714 Antisense
TTTCATTGTTCTTGGCAGTTGCGTC 685 671 767 Antisense
GGCAGTTGCGTCAAGTGTGGTTCCA 169 537 780 Antisense
GATCACATTTTTATTCAACCGTCCA 275 421 828 Antisense
ATCATGTTTTGTTTCTTCGTCCAAT 516 29 860 Antisense
GAAACAGCAACTTAAACCTAGCGGT 281 335 954 Antisense
ACCTAGCGGTGCATCAAGCGTTTTT 544 85 969 Antisense
Sequence Source Affymetrix Proprietary Database