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[182721_at]

Description K10C2.2 /REP_DB=WormBase Gene ID /WP=CE04748 /TR=Q94270 /GB=AAK39257.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 32
(1.5)
P 		17.6
(-3)
A 		27.5
(0.1)
A 		37
(3)
A 		19
B 37
(-1)
P 		68.1
(3)
A 		21.2
(-3)
A 		27.4
(-2.2)
A 		47
C 31.1
(-0.8)
M 		35.8
(-0.4)
P 		2.9
(-3)
A 		80
(3)
P 		77
avr 33.4
(0.1) 		40.5
(1.5) 		17.2
(-3) 		48.1
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 9
(-2.7)
A 		42
(0.4)
P 		70.4
(3)
P 		27.7
(-1)
A 		40.1
(0.2)
M 		5.7
(-3)
A 		65
B 35.7
(-0.8)
P 		50.3
(0.6)
P 		55.9
(1.2)
P 		75.1
(3)
P 		55.9
(1.2)
P 		12.4
(-3)
A 		63
C 49.5
(2.8)
P 		50.9
(3)
P 		6.6
(-3)
A 		27.3
(-0.2)
A 		18.6
(-1.4)
A 		24.7
(-0.5)
A 		44
avr 31.4
(0.1) 		47.7
(3) 		44.3
(2.4) 		43.4
(2.2) 		38.2
(1.3) 		14.3
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.7
(3)
P 		3.8
(-3)
A 		7.2
(-0.4)
A 		5.4
(-1.8)
A 		8
B 11.8
(0.5)
P 		16.8
(3)
A 		4.9
(-3)
A 		5.8
(-2.5)
A 		12
C 10.3
(1.5)
M 		10.3
(1.5)
P 		1
(-3)
A 		13.5
(3)
P 		13
avr 11.3
(3) 		10.3
(2.1) 		4.4
(-3) 		8.2
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		15
(2.9)
P 		15.3
(3)
P 		7
(-0.6)
A 		12.1
(1.6)
M 		1.4
(-3)
A 		14
B 12.4
(-0.4)
P 		16.7
(1)
P 		13.6
(-0)
P 		19.9
(2.1)
P 		22.7
(3)
P 		4.6
(-3)
A 		18
C 18.4
(3)
P 		15.5
(2)
P 		1.7
(-3)
A 		5.5
(-1.6)
A 		6
(-1.5)
A 		8.3
(-0.6)
A 		17
avr 10.8
(0.3) 		15.7
(3) 		10.2
(-0) 		10.8
(0.3) 		13.6
(1.8) 		4.8
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182721_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16298
Sequence Type Exemplar sequence
Representative Public ID K10C2.2 NCBI
Target Description K10C2.2 /REP_DB=WormBase Gene ID /WP=CE04748 /TR=Q94270 /GB=AAK39257.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076679 NCBI Caenorhabditis elegans K10C2.2 (K10C2.2) mRNA, complete cds. 11/11 None
K10C2.2 ENSEMBL cdna:known chromosome:CEL140:X:6432266:6433743:-1 gene:K10C2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6432265-6433743(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10C2.2
Entrez Gene 187252 Entrez gene
SwissProt Q94270 EMBL-EBI
WormBase CE04748 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39257 Hypothetical protein K10C2.2 [Caenorhabditis elegans] ref|NP_509080.1| K10C2.2 [Caenorhabditis elegans] 1.0E-100
blast CAE61257 Hypothetical protein CBG05063 [Caenorhabditis briggsae] 2.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509080.1 4 46-68,78-97,118-140,150-172
K10C2.2 4 46-68,78-97,118-140,150-172
Sequence
Target Sequence 
>C. ELEGANS:182721_AT
atgccttcctccttcgagaaaatgctcaaaagcttgagaaaaaaatttaattgcaagttt
gaaggattgaaactagagcaggaaaaagctatagttgaggctgttcttcgttgtctcttt
ttgtatttggcaagaaatccaatatatgtaacaattctaattggcatatttttgcttcac
gctgtttatcaagttctcatgtttccttcttctttgtggaatatgcgaacagtacttttt
ggtatttcgtcaatttctacgttgacatgcatatcaatgaccacagtgacgaaaaatgaa
ctctcaagatttttcgattcacctttggatataagaaacaatagagcatctcttttaaga
acatcagtagtaactatgcaagcacttttcggtgttgcacttgttctgctatcggttcaa
tttcatttcaacaattcgccttacgatattgttctggtcattctatgcatcataattaca
accagactcgtagttgttcttgttatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCTTCCTCCTTCGAGAAAATGC 621 39 13 Antisense
ATAGTTGAGGCTGTTCTTCGTTGTC 123 23 103 Antisense
TTCGTTGTCTCTTTTTGTATTTGGC 491 695 119 Antisense
GCATATTTTTGCTTCACGCTGTTTA 224 309 176 Antisense
TCATGTTTCCTTCTTCTTTGTGGAA 473 621 209 Antisense
GATTTTTCGATTCACCTTTGGATAT 318 427 320 Antisense
TTCGGTGTTGCACTTGTTCTGCTAT 578 695 400 Antisense
TCTGCTATCGGTTCAATTTCATTTC 397 609 417 Antisense
TTCATTTCAACAATTCGCCTTACGA 117 689 434 Antisense
GATATTGTTCTGGTCATTCTATGCA 391 427 457 Antisense
GACTCGTAGTTGTTCTTGTTATCTG 520 373 497 Antisense
Sequence Source Affymetrix Proprietary Database