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[182720_s_at]

Description K08B4.2 /REP_DB=WormBase Gene ID /WP=CE25940 /TR=Q9TYY6 /GB=AAC68979.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 01      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 26.1
(3)
P 		20.7
(-3)
A 		24.4
(1.1)
A 		21
(-2.7)
A 		5
B 18.6
(-3)
A 		22.1
(-1.2)
A 		30.2
(3)
A 		21.1
(-1.7)
A 		12
C 20.4
(-1.9)
A 		15.7
(-2.4)
A 		11.1
(-3)
A 		61.1
(3)
P 		50
avr 21.7
(-2.1) 		19.5
(-3) 		21.9
(-2) 		34.4
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 82.9
(1.8)
P 		22.3
(-3)
P 		26.1
(-2.7)
M 		36.3
(-1.9)
A 		46.8
(-1.1)
A 		97.8
(3)
P 		76
B 58.3
(-1.4)
P 		24.7
(-3)
P 		38
(-2.4)
P 		43.8
(-2.1)
A 		25.4
(-3)
A 		149.3
(3)
P 		125
C 58.4
(-0.4)
P 		26
(-3)
A 		29.2
(-2.7)
A 		32.6
(-2.5)
A 		37.9
(-2.1)
A 		101.3
(3)
P 		75
avr 66.5
(-0.2) 		24.3
(-3) 		31.1
(-2.6) 		37.6
(-2.1) 		36.7
(-2.2) 		116.1
(3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 9.5
(3)
P 		4.5
(-1.7)
A 		6.4
(0.1)
A 		3.1
(-3)
A 		6
B 5.9
(0.4)
A 		5.5
(-0.6)
A 		7
(3)
A 		4.5
(-3)
A 		3
C 6.8
(-0.3)
A 		4.5
(-2.4)
A 		3.9
(-3)
A 		10.3
(3)
P 		6
avr 7.4
(3) 		4.8
(-3) 		5.8
(-0.7) 		6
(-0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 15.3
(0.2)
P 		7.9
(-2.3)
P 		5.7
(-3)
M 		9.2
(-1.8)
A 		14.1
(-0.2)
A 		23.8
(3)
P 		18
B 20.3
(-1.5)
P 		8.2
(-3)
P 		9.2
(-2.9)
P 		11.6
(-2.6)
A 		10.3
(-2.7)
A 		55.7
(3)
P 		48
C 21.6
(0.3)
P 		7.9
(-2.7)
A 		7.4
(-2.8)
A 		6.5
(-3)
A 		12.3
(-1.7)
A 		33.9
(3)
P 		27
avr 19.1
(-0.7) 		8
(-2.9) 		7.4
(-3) 		9.1
(-2.7) 		12.2
(-2.1) 		37.8
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182720_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10810
Sequence Type Exemplar sequence
Representative Public ID K08B4.2 NCBI
Target Description K08B4.2 /REP_DB=WormBase Gene ID /WP=CE25940 /TR=Q9TYY6 /GB=AAC68979.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068510(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068510 NCBI Caenorhabditis elegans K08B4.2 (K08B4.2) mRNA, complete cds. 11/11 None
SNAP00000004902 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6075284:6076140:-1 11/11 None
GENEFINDER00000004917 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6075304:6076140:-1 11/11 None
K08B4.2 ENSEMBL cdna:known chromosome:CEL140:IV:6075284:6076140:-1 gene:K08B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6075289-6076146(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08B4.2
Entrez Gene 177371 Entrez gene
SwissProt Q9TYY6 EMBL-EBI
WormBase CE25940 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68979 Hypothetical protein K08B4.2 [Caenorhabditis elegans] ref|NP_500911.1| K08B4.2 [Caenorhabditis elegans] 8.0E-96
blast AAC68979 Hypothetical protein K08B4.2 [Caenorhabditis elegans] ref|NP_500911.1| K08B4.2 [Caenorhabditis elegans] 1.0E-92
blast CAE61608 Hypothetical protein CBG05527 [Caenorhabditis briggsae] 3.0E-73
blast CAE61608 Hypothetical protein CBG05527 [Caenorhabditis briggsae] 4.0E-70
Sequence
Target Sequence 
>C. ELEGANS:182720_S_AT
gactgtttcacaatatggatcggcattcgaattccaagttctcgactacacacctgttga
attttcattcaatcaagatattgatgaagaagttctcacgaaatgctgcacagaaaccgc
aaacttcaattttcgggcatacggcagagatttcccgcttcgtctccagagaagttgtca
gataaaagaagagttcgcagaggaaactgcacagttttctgacgaaggtacagcgtggca
agggaagttggaagaccaaccaaattccacagtagacggcgaaatcatcaatggactatt
tgaaggaattattctaactggagacggagagaaattcatgatcgaaagagaatttcaatc
cgatggaaagggacactcgataatttacaaggtgtcttcgagaaaacaagtgatcaaaac
tctttttccagacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGTTTCACAATATGGATCGGCA 697 375 45 Antisense
ATCGGCATTCGAATTCCAAGTTCTC 408 35 63 Antisense
TTCTCGACTACACACCTGTTGAATT 448 693 83 Antisense
GAAGTTCTCACGAAATGCTGCACAG 119 337 133 Antisense
TGCTGCACAGAAACCGCAAACTTCA 684 579 148 Antisense
GCAAACTTCAATTTTCGGGCATACG 462 315 163 Antisense
ATACGGCAGAGATTTCCCGCTTCGT 384 23 183 Antisense
TCCCGCTTCGTCTCCAGAGAAGTTG 490 595 197 Antisense
AACTGCACAGTTTTCTGACGAAGGT 355 141 249 Antisense
AGACCAACCAAATTCCACAGTAGAC 120 71 297 Antisense
GTGATCAAAACTCTTTTTCCAGACG 131 483 454 Antisense
Sequence Source Affymetrix Proprietary Database