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[182719_at]

Description F18G5.1 /REP_DB=WormBase Gene ID /WP=CE04409 /TR=Q19575 /GB=AAA81084.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 9.9
(-1)
A 		1.5
(-2.9)
A 		0.9
(-3)
A 		27.7
(3)
A 		27
B 1.4
(-2.2)
A 		2.4
(-0.2)
A 		1
(-3)
A 		4
(3)
A 		3
C 22.6
(0.5)
A 		3
(-2.7)
A 		1.4
(-3)
A 		37.3
(3)
A 		36
avr 11.3
(-0.2) 		2.3
(-2.7) 		1.1
(-3) 		23
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.9
(-2.3)
A 		8.6
(3)
A 		1
(-3)
A 		1.3
(-2.8)
A 		4.4
(-0.3)
A 		4.8
(0)
A 		8
B 3.9
(-2.9)
A 		6.4
(-1.6)
A 		5.9
(-1.8)
A 		3.7
(-3)
A 		5.3
(-2.2)
A 		15
(3)
A 		11
C 17.6
(0.5)
A 		29.2
(3)
A 		0.8
(-3)
A 		2.6
(-2.6)
A 		0.9
(-3)
A 		1.3
(-2.9)
A 		28
avr 7.8
(-0.4) 		14.7
(3) 		2.6
(-3) 		2.5
(-3) 		3.5
(-2.5) 		7
(-0.8) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.6
(2.2)
A 		0.3
(-2.8)
A 		0.2
(-3)
A 		4.1
(3)
A 		4
B 0.4
(-1)
A 		0.6
(1)
A 		0.2
(-3)
A 		0.8
(3)
A 		1
C 7.5
(3)
A 		0.9
(-2.7)
A 		0.5
(-3)
A 		6.3
(2)
A 		7
avr 3.8
(3) 		0.6
(-2.5) 		0.3
(-3) 		3.7
(2.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.3
(-2.8)
A 		3
(3)
A 		0.2
(-3)
A 		0.3
(-2.8)
A 		1.3
(-0.6)
A 		1.2
(-0.9)
A 		3
B 1.4
(-2.5)
A 		2.1
(-1.6)
A 		1.4
(-2.5)
A 		1
(-3)
A 		2.2
(-1.4)
A 		5.6
(3)
A 		5
C 6.5
(1.3)
A 		8.9
(3)
A 		0.2
(-3)
A 		0.5
(-2.8)
A 		0.3
(-2.9)
A 		0.4
(-2.9)
A 		9
avr 2.7
(0.1) 		4.7
(3) 		0.6
(-3) 		0.6
(-3) 		1.3
(-2) 		2.4
(-0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182719_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16469
Sequence Type Exemplar sequence
Representative Public ID F18G5.1 NCBI
Target Description F18G5.1 /REP_DB=WormBase Gene ID /WP=CE04409 /TR=Q19575 /GB=AAA81084.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077159(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077159 NCBI Caenorhabditis elegans F18G5.1 (F18G5.1) mRNA, complete cds. 11/11 None
SNAP00000036139 ENSEMBL cdna:SNAP chromosome:CEL140:X:9259782:9260996:1 11/11 None
GENEFINDER00000036147 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9259782:9261658:1 11/11 None
F18G5.1 ENSEMBL cdna:known chromosome:CEL140:X:9259782:9260996:1 gene:F18G5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9259781-9260996(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18G5.1
Entrez Gene 184654 Entrez gene
SwissProt Q19575 EMBL-EBI
WormBase CE04409 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81084 Hypothetical protein F18G5.1 [Caenorhabditis elegans] ref|NP_509560.1| F18G5.1 [Caenorhabditis elegans] 5.0E-64
blast AAA81084 Hypothetical protein F18G5.1 [Caenorhabditis elegans] ref|NP_509560.1| F18G5.1 [Caenorhabditis elegans] 8.0E-63
Sequence
Target Sequence 
>C. ELEGANS:182719_AT
atgcaagcagttgaacatcttccgaaaagtcaggccaacagcggaaagattccgctagaa
gacttgaaaaccgattcatataataacgacatcgaaggaacaaaagaagtaatataccta
tacattcaaccaagaagaataagcatctacgctccaaagtttaaatatggaccaaatcgt
caatattcagatgatgaaaacgagacattgagctctgatgagaaggaaactgaaaatttt
tcagttcaaaacccatttgtgacacatcaaggaaacatcaaaaacgctaatcttgacaat
catacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAAGCAGTTGAACATCTTCCGA 590 43 13 Antisense
ACATCTTCCGAAAAGTCAGGCCAAC 674 103 27 Antisense
GTCAGGCCAACAGCGGAAAGATTCC 532 463 41 Antisense
GAAAGATTCCGCTAGAAGACTTGAA 681 359 56 Antisense
ATATACCTATACATTCAACCAAGAA 380 1 124 Antisense
GAAGAATAAGCATCTACGCTCCAAA 283 341 146 Antisense
GCATCTACGCTCCAAAGTTTAAATA 165 307 155 Antisense
GACCAAATCGTCAATATTCAGATGA 307 383 182 Antisense
AAACGAGACATTGAGCTCTGATGAG 225 127 210 Antisense
GTTCAAAACCCATTTGTGACACATC 145 445 256 Antisense
AAACGCTAATCTTGACAATCATACC 697 125 294 Antisense
Sequence Source Affymetrix Proprietary Database