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[182718_s_at]

Description F56B3.6 /REP_DB=WormBase Gene ID /WP=CE17887 /TR=O45108 /GB=AAK29829.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.9
(-3)
A 		2.5
(-2.3)
A 		2.7
(-2)
A 		6.7
(3)
A 		5
B 1.9
(-3)
A 		2.7
(0)
A 		2.5
(-0.8)
A 		3.5
(3)
A 		2
C 2
(-3)
A 		2.9
(0.2)
A 		2.3
(-1.9)
A 		3.7
(3)
A 		2
avr 1.9
(-3) 		2.7
(-1.2) 		2.5
(-1.7) 		4.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 3
(-2.8)
A 		1.9
(-3)
A 		1.7
(-3)
A 		2.5
(-2.9)
A 		7.2
(-2.3)
A 		51.7
(3)
A 		50
B 1.8
(-3)
A 		1.8
(-3)
A 		2
(-3)
A 		2.6
(-2.9)
A 		5.9
(-2.6)
A 		64.1
(3)
A 		62
C 3
(-2.9)
A 		2
(-3)
A 		2.2
(-3)
A 		2.8
(-2.9)
A 		8.5
(-2.5)
A 		79.2
(3)
A 		77
avr 2.6
(-2.9) 		1.9
(-3) 		2
(-3) 		2.6
(-2.9) 		7.2
(-2.5) 		65
(3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.7
(-0.6)
A 		0.5
(-3)
A 		0.7
(-0.6)
A 		1
(3)
A 		1
B 0.6
(-3)
A 		0.7
(3)
A 		0.6
(-3)
A 		0.7
(3)
A 		0
C 0.7
(-0)
A 		0.8
(3)
A 		0.8
(3)
A 		0.6
(-3)
A 		0
avr 0.7
(-3) 		0.7
(-3) 		0.7
(-3) 		0.8
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.7
(-2.9)
A 		0.4
(-3)
A 		0.6
(-2.9)
A 		2.2
(-2.1)
A 		12.6
(3)
A 		12
B 0.6
(-3)
A 		0.6
(-3)
A 		0.5
(-3)
A 		0.7
(-2.9)
A 		2.4
(-2.5)
A 		23.9
(3)
A 		23
C 1.1
(-2.9)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		2.8
(-2.5)
A 		26.5
(3)
A 		26
avr 0.7
(-2.9) 		0.6
(-3) 		0.5
(-3) 		0.6
(-3) 		2.5
(-2.4) 		21
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182718_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10808
Sequence Type Exemplar sequence
Representative Public ID F56B3.6 NCBI
Target Description F56B3.6 /REP_DB=WormBase Gene ID /WP=CE17887 /TR=O45108 /GB=AAK29829.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067589(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067589 NCBI Caenorhabditis elegans F56B3.6 (F56B3.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000041570 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:788126:790975:1 11/11 None
F56B3.6 ENSEMBL cdna:known chromosome:CEL140:IV:788126:790735:1 gene:F56B3.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:788131-790741(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56B3.6
Entrez Gene 176906 Entrez gene
SwissProt O45108 EMBL-EBI
WormBase CE17887 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29829 Hypothetical protein F56B3.6 [Caenorhabditis elegans] ref|NP_499990.1| F56B3.6 [Caenorhabditis elegans] 1.0E-106
blast AAK29829 Hypothetical protein F56B3.6 [Caenorhabditis elegans] ref|NP_499990.1| F56B3.6 [Caenorhabditis elegans] 2.0E-91
blast CAE56264 Hypothetical protein CBG23909 [Caenorhabditis briggsae] 3.0E-53
blast CAE56264 Hypothetical protein CBG23909 [Caenorhabditis briggsae] 2.0E-46
blast CAD21647 Hypothetical protein T03F6.6 [Caenorhabditis elegans] ref|NP_499756.2| T03F6.6 [Caenorhabditis elegans] 2.0E-37
blast CAD21647 Hypothetical protein T03F6.6 [Caenorhabditis elegans] ref|NP_499756.2| T03F6.6 [Caenorhabditis elegans] 4.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR004345 EMBL-EBI TB2/DP1 and HVA22 related protein 2.3E-57
Pfam IPR004345 EMBL-EBI TB2/DP1 and HVA22 related protein 1.7E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499990.1 3 87-109,129-148,150-172
F56B3.6 3 87-109,129-148,150-172
GENEFINDER00000041570 2 104-126,172-194
Sequence
Target Sequence 
>C. ELEGANS:182718_S_AT
tcaaaatcgtgcagccagtgctctcggagcagctgcatcttcaacttctggacaaccggc
agaaacgccacgtgcagctctgaaacgccacgtggctccgactgaaggattggctgttgc
tcagaatgacatacacaatttcctgttcgaatcacacggacaaatcttcgatatggcgat
gatgtacgccgaatcggccggtttcaaacgagatcacctctcgtacgccgcgttcggttt
gatcgcattcttcttggttttcggatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAATCGTGCAGCCAGTGCTCTC 1 631 39 Antisense
TCTCGGAGCAGCTGCATCTTCAACT 23 613 60 Antisense
ATCTTCAACTTCTGGACAACCGGCA 577 13 75 Antisense
GACAACCGGCAGAAACGCCACGTGC 431 365 89 Antisense
CCACGTGCAGCTCTGAAACGCCACG 341 273 106 Antisense
CCACGTGGCTCCGACTGAAGGATTG 42 275 126 Antisense
ATTTCCTGTTCGAATCACACGGACA 203 15 176 Antisense
GATGTACGCCGAATCGGCCGGTTTC 72 397 219 Antisense
GGCCGGTTTCAAACGAGATCACCTC 645 541 234 Antisense
CGCGTTCGGTTTGATCGCATTCTTC 190 249 267 Antisense
CGCATTCTTCTTGGTTTTCGGATCT 707 253 282 Antisense
Sequence Source Affymetrix Proprietary Database