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[182717_at]

Description F56B3.6 /REP_DB=WormBase Gene ID /WP=CE17887 /TR=O45108 /GB=AAK29829.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 4.6
(-3)
A 		7.5
(-2)
A 		12.3
(-0.4)
A 		22.5
(3)
A 		18
B 4.1
(-3)
A 		27
(3)
A 		6.4
(-2.4)
A 		11.1
(-1.2)
A 		23
C 3
(-3)
A 		6.4
(-2.7)
A 		3.3
(-3)
A 		61.4
(3)
A 		58
avr 3.9
(-3) 		13.6
(-0.9) 		7.3
(-2.3) 		31.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 6.1
(-2.9)
A 		35
(-1.6)
A 		3.6
(-3)
A 		38
(-1.5)
A 		94.6
(1.1)
A 		138.3
(3)
P 		135
B 3.4
(-3)
A 		16.1
(-2.4)
A 		54.7
(-0.7)
A 		22.2
(-2.1)
A 		115.5
(2.1)
A 		135.9
(3)
P 		133
C 7.2
(-3)
A 		10.9
(-2.9)
A 		12.7
(-2.8)
A 		49.4
(-1.7)
A 		101.6
(-0.1)
A 		199.9
(3)
P 		193
avr 5.6
(-3) 		20.7
(-2.4) 		23.7
(-2.3) 		36.5
(-1.8) 		103.9
(0.9) 		158
(3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.7
(-2.6)
A 		1.6
(-3)
A 		3.2
(2.6)
A 		3.3
(3)
A 		2
B 1.3
(-3)
A 		6.7
(3)
A 		1.5
(-2.8)
A 		2.4
(-1.8)
A 		5
C 1
(-3)
A 		1.9
(-2.4)
A 		1.1
(-2.9)
A 		10.3
(3)
A 		9
avr 1.3
(-3) 		3.4
(0.1) 		1.9
(-2.1) 		5.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 1.1
(-2.9)
A 		12.5
(-0.9)
A 		0.8
(-3)
A 		9.6
(-1.4)
A 		28.5
(2.1)
A 		33.7
(3)
P 		33
B 1.2
(-3)
A 		5.4
(-2.5)
A 		13.3
(-1.5)
A 		5.9
(-2.4)
A 		46.9
(2.5)
A 		50.7
(3)
P 		50
C 2.7
(-3)
A 		3.3
(-2.9)
A 		3.2
(-3)
A 		9.9
(-2.3)
A 		32.9
(-0.2)
A 		66.9
(3)
P 		64
avr 1.7
(-3) 		7.1
(-2.3) 		5.8
(-2.5) 		8.5
(-2.2) 		36.1
(1.2) 		50.4
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182717_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10808
Sequence Type Exemplar sequence
Representative Public ID F56B3.6 NCBI
Target Description F56B3.6 /REP_DB=WormBase Gene ID /WP=CE17887 /TR=O45108 /GB=AAK29829.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067589(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067589 NCBI Caenorhabditis elegans F56B3.6 (F56B3.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000041570 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:788126:790975:1 11/11 None
F56B3.6 ENSEMBL cdna:known chromosome:CEL140:IV:788126:790735:1 gene:F56B3.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:788131-790741(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56B3.6
Entrez Gene 176906 Entrez gene
SwissProt O45108 EMBL-EBI
WormBase CE17887 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29829 Hypothetical protein F56B3.6 [Caenorhabditis elegans] ref|NP_499990.1| F56B3.6 [Caenorhabditis elegans] 1.0E-106
blast AAK29829 Hypothetical protein F56B3.6 [Caenorhabditis elegans] ref|NP_499990.1| F56B3.6 [Caenorhabditis elegans] 2.0E-91
blast CAE56264 Hypothetical protein CBG23909 [Caenorhabditis briggsae] 3.0E-53
blast CAE56264 Hypothetical protein CBG23909 [Caenorhabditis briggsae] 2.0E-46
blast CAD21647 Hypothetical protein T03F6.6 [Caenorhabditis elegans] ref|NP_499756.2| T03F6.6 [Caenorhabditis elegans] 2.0E-37
blast CAD21647 Hypothetical protein T03F6.6 [Caenorhabditis elegans] ref|NP_499756.2| T03F6.6 [Caenorhabditis elegans] 4.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR004345 EMBL-EBI TB2/DP1 and HVA22 related protein 2.3E-57
Pfam IPR004345 EMBL-EBI TB2/DP1 and HVA22 related protein 1.7E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499990.1 3 87-109,129-148,150-172
F56B3.6 3 87-109,129-148,150-172
GENEFINDER00000041570 2 104-126,172-194
Sequence
Target Sequence 
>C. ELEGANS:182717_AT
tgcccgtggaaatacatcagctcaaaatcgtgcagccagtgctctcggagcagctgcatc
ttcaacttctggacaaccggcagaaacgccacgtgcagctctgaaacgccacgtggctcc
gactgaaggattggctgttgctcagaatgacatacacaatttcctgttcgaatcacacgg
acaaatcttcgatatggcgatgatgtacgccgaatcggccggtttcaaacgagatcacct
ctcgtacgccgcgttcggtttgatcgcattcttcttggttttcggatctgtggcacgtct
tttgtgcaatttgatcggtttcgggtatccgacgtacgccagtgttaaggcaatccgttc
gccgggaggcgacgacgacacggtctggctgatctactggacatgtttcgcagtactgta
cctcgtcgactttttctcggaggcaattctgtcgtggttcccgttctactatattgcgaa
ggcatgcttcctggtgtacttgtatcttccacaaactcaaggatctgtcatgttctatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCCGTGGAAATACATCAGCTCAA 191 585 18 Antisense
TTCGGATCTGTGGCACGTCTTTTGT 124 695 298 Antisense
TATCCGACGTACGCCAGTGTTAAGG 616 379 343 Antisense
TGTTAAGGCAATCCGTTCGCCGGGA 59 545 360 Antisense
GGCTGATCTACTGGACATGTTTCGC 41 539 404 Antisense
TGTTTCGCAGTACTGTACCTCGTCG 689 559 421 Antisense
TACCTCGTCGACTTTTTCTCGGAGG 262 649 436 Antisense
CTCGGAGGCAATTCTGTCGTGGTTC 224 231 453 Antisense
TGGTTCCCGTTCTACTATATTGCGA 648 549 472 Antisense
GCATGCTTCCTGGTGTACTTGTATC 65 311 499 Antisense
ACTCAAGGATCTGTCATGTTCTATG 266 95 532 Antisense
Sequence Source Affymetrix Proprietary Database