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[182715_at]

Description K03H1.11 /REP_DB=WormBase Gene ID /WP=CE01026 /TR=Q21199 /GB=CAA82663.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 59.9
(-2.4)
P 		73.3
(-1.9)
A 		43.5
(-3)
A 		204.4
(3)
P 		161
B 58.1
(-2.1)
P 		45.4
(-3)
A 		73.8
(-0.9)
A 		127.2
(3)
P 		82
C 68.3
(-2.2)
A 		82.8
(-1.6)
P 		49.6
(-3)
A 		187.2
(3)
P 		138
avr 62.1
(-2.7) 		67.2
(-2.4) 		55.6
(-3) 		172.9
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 97.7
(2.3)
A 		56.2
(-3)
A 		81.4
(0.2)
P 		85.5
(0.7)
A 		77.8
(-0.2)
A 		103.2
(3)
A 		47
B 40.9
(-3)
P 		61.3
(-0.8)
A 		50.7
(-2)
A 		97.4
(3)
A 		55.1
(-1.5)
A 		64.4
(-0.5)
P 		57
C 63.5
(-2.9)
A 		64.6
(-2.4)
M 		72.8
(2.1)
A 		74.5
(3)
A 		69.6
(0.4)
P 		63.4
(-3)
P 		11
avr 67.4
(-1.4) 		60.7
(-3) 		68.3
(-1.2) 		85.8
(3) 		67.5
(-1.4) 		77
(0.9) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.8
(0.4)
P 		15.9
(-1.5)
A 		11.4
(-3)
A 		29.9
(3)
P 		19
B 18.5
(-0.2)
P 		11.2
(-3)
A 		17.1
(-0.8)
A 		27.1
(3)
P 		16
C 22.6
(-0.8)
A 		23.8
(-0.3)
P 		17.3
(-3)
A 		31.6
(3)
P 		14
avr 21
(-0.6) 		17
(-2.3) 		15.3
(-3) 		29.5
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 18
(-2.8)
A 		20
(-1.1)
A 		17.7
(-3)
P 		21.7
(0.2)
A 		23.5
(1.7)
A 		25.1
(3)
A 		7
B 14.2
(-2.2)
P 		20.4
(0.6)
A 		12.3
(-3)
A 		25.8
(3)
A 		22.4
(1.5)
A 		24
(2.2)
P 		14
C 23.5
(3)
A 		19.7
(0.3)
M 		18.5
(-0.5)
A 		15
(-3)
A 		22.5
(2.3)
P 		21.2
(1.4)
P 		9
avr 18.6
(-1) 		20
(0.2) 		16.2
(-3) 		20.8
(0.8) 		22.8
(2.5) 		23.4
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182715_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6439
Sequence Type Exemplar sequence
Representative Public ID K03H1.11 NCBI
Target Description K03H1.11 /REP_DB=WormBase Gene ID /WP=CE01026 /TR=Q21199 /GB=CAA82663.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066810 NCBI Caenorhabditis elegans K03H1.11 (K03H1.11) mRNA, complete cds. 11/11 None
GENEFINDER00000019364 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9949364:9956104:-1 11/11 None
SNAP00000019350 ENSEMBL cdna:SNAP chromosome:CEL140:III:9950804:9951855:-1 11/11 None
K03H1.11 ENSEMBL cdna:known chromosome:CEL140:III:9950804:9951855:-1 gene:K03H1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9950799-9951851(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H1.11
Entrez Gene 186961 Entrez gene
SwissProt Q21199 EMBL-EBI
WormBase CE01026 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82662 Hypothetical protein K03H1.2 [Caenorhabditis elegans] ref|NP_499212.1| Masculinisation Of Germline family member (mog-1) [Caenorhabditis elegans] sp|P34498|MOG1_CAEEL Probable pre-mRNA splicing factor ATP-dependent RNA helicase mog-1 (Sex determination protein mog-1) (Masculinization of germ line protein 1) gb|AAD13795.1| sex determination protein MOG-1 [Caenorhabditis elegans] 0.0
blast CAE65079 Hypothetical protein CBG09937 [Caenorhabditis briggsae] 0.0
blast AAH63744 Hypothetical protein LOC393850 [Danio rerio] ref|NP_957170.1| hypothetical protein LOC393850 [Danio rerio] 0.0
blast CAA82663 Hypothetical protein K03H1.11 [Caenorhabditis elegans] ref|NP_499211.1| K03H1.11 [Caenorhabditis elegans] 1.0E-165
blast CAE65080 Hypothetical protein CBG09938 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR007502 EMBL-EBI Helicase-associated region 7.4E-52
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 5.9E-13
Sequence
Target Sequence 
>C. ELEGANS:182715_AT
aacgaaattcattcccttcaattggaaaatgaattagtcggcgacgagatttctgatgaa
cagctagctcaactgctccaattgacaaaaaatgctccactaaagcaactggcactatct
gaaattgatttggaacgaataaatacatggactctcgctttacttgctggttatgataag
cttgagaaagttgagattgaaggatgcaatttgggaggtgacactgaagcaaagttgctc
agatgctttcaggcatctttccagactcttactcaaattgatttgaaagggacttcacag
atcacagatcacttctcccaacgcgtttcccgttcatgcccgaatcttgcgtacttcagg
atctccgactgcccacgagttaccactctatcggctcttccattcatcgaatcgaccgca
tttcgtctatccgacaaacttgatgtgcacatggacaatactgaattcgatgcgaatcaa
cttcaaaactttatgagatctccactttttggatcacaatctgctgaatggagtctcaag
ccagttgttgttcctcttggttacgataagccggctgttcttgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGAAATTCATTCCCTTCAATTGG 371 143 280 Antisense
CTAGCTCAACTGCTCCAATTGACAA 320 223 343 Antisense
AATACATGGACTCTCGCTTTACTTG 72 169 421 Antisense
ACTCTCGCTTTACTTGCTGGTTATG 31 101 430 Antisense
CATCTTTCCAGACTCTTACTCAAAT 394 213 533 Antisense
ACAGATCACAGATCACTTCTCCCAA 55 109 576 Antisense
GAATCTTGCGTACTTCAGGATCTCC 172 329 621 Antisense
CGAATCGACCGCATTTCGTCTATCC 545 253 687 Antisense
GAGATCTCCACTTTTTGGATCACAA 326 397 774 Antisense
GCCAGTTGTTGTTCCTCTTGGTTAC 132 271 819 Antisense
TACGATAAGCCGGCTGTTCTTGCTC 26 649 841 Antisense
Sequence Source Affymetrix Proprietary Database