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[182714_at]

Description F37C4.7 /REP_DB=WormBase Gene ID /WP=CE17050 /TR=O44401 /GB=AAB95173.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 81.8
(0.5)
A 		109.8
(3)
A 		41.4
(-3)
A 		63.1
(-1.1)
A 		68
B 64.5
(-0.5)
A 		30.8
(-3)
A 		80.6
(0.7)
A 		110.9
(3)
A 		80
C 44.5
(-1.9)
A 		13.8
(-2.9)
A 		9.9
(-3)
A 		207.4
(3)
A 		198
avr 63.6
(-1.6) 		51.5
(-2.5) 		44
(-3) 		127.1
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 16.6
(-2.5)
A 		10.3
(-3)
A 		11
(-2.9)
A 		35.9
(-1.1)
A 		53.3
(0.3)
A 		89.1
(3)
A 		79
B 11.1
(-3)
A 		24.4
(-1.1)
A 		13
(-2.7)
A 		26.9
(-0.8)
A 		44.1
(1.7)
A 		53.3
(3)
A 		42
C 6.1
(-3)
A 		13.2
(-2.2)
A 		16.9
(-1.7)
A 		15.7
(-1.9)
A 		57
(3)
A 		42.8
(1.3)
A 		51
avr 11.3
(-3) 		16
(-2.4) 		13.6
(-2.7) 		26.2
(-1.2) 		51.5
(1.8) 		61.7
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 29.8
(3)
A 		23.8
(1.3)
A 		10.8
(-2.5)
A 		9.2
(-3)
A 		21
B 20.6
(1.9)
A 		7.6
(-3)
A 		18.7
(1.2)
A 		23.6
(3)
A 		16
C 14.7
(-0.9)
A 		4
(-2.9)
A 		3.4
(-3)
A 		35
(3)
A 		32
avr 21.7
(2.5) 		11.8
(-2.6) 		11
(-3) 		22.6
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 3.1
(-2.8)
A 		3.7
(-2.6)
A 		2.4
(-3)
A 		9.1
(-0.9)
A 		16.1
(1.3)
A 		21.7
(3)
A 		19
B 3.9
(-2.7)
A 		8.1
(-1.2)
A 		3.2
(-3)
A 		7.1
(-1.6)
A 		17.9
(2.3)
A 		19.9
(3)
A 		17
C 2.2
(-3)
A 		4
(-2.3)
A 		4.3
(-2.2)
A 		3.2
(-2.6)
A 		18.5
(3)
A 		14.3
(1.5)
A 		16
avr 3.1
(-3) 		5.3
(-2.1) 		3.3
(-2.9) 		6.5
(-1.7) 		17.5
(2.6) 		18.6
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10945
Sequence Type Exemplar sequence
Representative Public ID F37C4.7 NCBI
Target Description F37C4.7 /REP_DB=WormBase Gene ID /WP=CE17050 /TR=O44401 /GB=AAB95173.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068028 NCBI Caenorhabditis elegans F37C4.7 (F37C4.7) mRNA, complete cds. 11/11 None
F37C4.7 ENSEMBL cdna:known chromosome:CEL140:IV:3878541:3879000:-1 gene:F37C4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038136 5/11 Cross Hyb Matching Probes None
GENEFINDER00000038144 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3878546-3879006(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37C4.7
Entrez Gene 185420 Entrez gene
SwissProt O44401 EMBL-EBI
WormBase CE17050 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95173 Hypothetical protein F37C4.7 [Caenorhabditis elegans] ref|NP_500429.1| F37C4.7 [Caenorhabditis elegans] 3.0E-61
blast CAE65668 Hypothetical protein CBG10734 [Caenorhabditis briggsae] 8.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500429.1 1 95-117
F37C4.7 1 95-117
Sequence
Target Sequence 
>C. ELEGANS:182714_AT
tatttcgcggttttgaggttccagccttattccataatgtatgtttccctaaaaattcac
atccagttccaacaccccaacagcgaagacctgatagtgcgactcagcgaagcggagctc
gccgagaacccaaagatcattgccgttatcagctatcagtccccgtcgcaaatcgaaatt
gccgtcgacctggtgttgaaaacaaaacagaagagaccaaatgaagatagaaaacaagat
gaccactggttttcgattattcttatcttgtcgctggcattgtgtactctgatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTCGCGGTTTTGAGGTTCCAGC 286 661 46 Antisense
GGTTCCAGCCTTATTCCATAATGTA 475 505 62 Antisense
AAAAATTCACATCCAGTTCCAACAC 538 129 96 Antisense
AACACCCCAACAGCGAAGACCTGAT 521 127 116 Antisense
GCGACTCAGCGAAGCGGAGCTCGCC 384 281 144 Antisense
CATTGCCGTTATCAGCTATCAGTCC 362 217 183 Antisense
TCAGTCCCCGTCGCAAATCGAAATT 504 615 201 Antisense
AAATTGCCGTCGACCTGGTGTTGAA 659 115 221 Antisense
GACCACTGGTTTTCGATTATTCTTA 550 383 286 Antisense
ATTATTCTTATCTTGTCGCTGGCAT 494 13 301 Antisense
TCGCTGGCATTGTGTACTCTGATCA 679 597 316 Antisense
Sequence Source Affymetrix Proprietary Database