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[182711_at] 7TM chemoreceptor, srx family

Description F41F3.6 /REP_DB=WormBase Gene ID /WP=CE07220 /TR=Q20285 /GB=AAA97985.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 10      6grp_cgc > 93      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 1.3
(-3)
A 		1.7
(-1.5)
A 		2.3
(0.8)
A 		2.9
(3)
A 		2
B 1.5
(-3)
A 		3
(3)
A 		2
(-1)
A 		2.1
(-0.6)
A 		2
C 1.3
(-3)
A 		3.7
(-2.6)
A 		1.1
(-3)
A 		39.3
(3)
A 		38
avr 1.4
(-3) 		2.8
(-2.4) 		1.8
(-2.8) 		14.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.1
(-2.7)
A 		2.3
(-2.6)
A 		13.4
(3)
A 		1.8
(-2.8)
A 		5.9
(-0.8)
A 		1.5
(-3)
A 		12
B 5.1
(-1.9)
A 		1.6
(-2.9)
A 		22.4
(3)
A 		1.6
(-2.9)
A 		1.4
(-3)
A 		3.5
(-2.4)
A 		21
C 7.6
(-1.7)
A 		3.3
(-2.6)
A 		1.6
(-3)
A 		28.8
(3)
A 		1.5
(-3)
A 		4.9
(-2.3)
A 		27
avr 4.9
(-1.5) 		2.4
(-3) 		12.5
(3) 		10.7
(1.9) 		2.9
(-2.7) 		3.3
(-2.5) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.5
(0)
A 		0.4
(-3)
A 		0.6
(3)
A 		0.4
(-3)
A 		0
B 0.5
(-3)
A 		0.7
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0
C 0.4
(-3)
A 		1.1
(-2.3)
A 		0.4
(-3)
A 		6.6
(3)
A 		6
avr 0.5
(-3) 		0.7
(-2.4) 		0.5
(-3) 		2.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.8
(-2)
A 		2.9
(3)
A 		0.5
(-2.8)
A 		1.8
(0.4)
A 		0.4
(-3)
A 		3
B 1.8
(-1.3)
A 		0.5
(-2.9)
A 		5.4
(3)
A 		0.4
(-3)
A 		0.6
(-2.8)
A 		1.3
(-1.9)
A 		5
C 2.8
(-0.3)
A 		1
(-2.3)
A 		0.4
(-3)
A 		5.8
(3)
A 		0.5
(-2.9)
A 		1.7
(-1.6)
A 		5
avr 1.7
(-0.4) 		0.8
(-3) 		2.9
(3) 		2.2
(1) 		1
(-2.4) 		1.1
(-2.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182711_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14958
Sequence Type Exemplar sequence
Representative Public ID F41F3.6 NCBI
Target Description F41F3.6 /REP_DB=WormBase Gene ID /WP=CE07220 /TR=Q20285 /GB=AAA97985.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071854(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071854 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-74) (srx-74) mRNA, complete cds. 11/11 None
SNAP00000023066 ENSEMBL cdna:SNAP chromosome:CEL140:V:4655972:4659562:-1 9/11 None
GENEFINDER00000023072 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4658768:4664911:-1 11/11 None
F41F3.6 ENSEMBL cdna:known chromosome:CEL140:V:4658768:4659843:-1 gene:F41F3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4658767-4659843(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-74
Ensembl F41F3.6
Entrez Gene 185628 Entrez gene
SwissProt Q20285 EMBL-EBI
WormBase CE38184 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97985 Serpentine receptor, class x protein 74 [Caenorhabditis elegans] ref|NP_504255.2| Serpentine Receptor, class X family member (srx-74) [Caenorhabditis elegans] 1.0E-160
blast AAA97985 Serpentine receptor, class x protein 74 [Caenorhabditis elegans] ref|NP_504255.2| Serpentine Receptor, class X family member (srx-74) [Caenorhabditis elegans] 1.0E-132
blast AAA97985 Serpentine receptor, class x protein 74 [Caenorhabditis elegans] ref|NP_504255.2| Serpentine Receptor, class X family member (srx-74) [Caenorhabditis elegans] 1.0E-129
blast AAZ91347 Serpentine receptor, class x protein 73 [Caenorhabditis elegans] 1.0E-112
blast NP_504256 Serpentine Receptor, class X family member (srx-73) [Caenorhabditis elegans] 1.0E-112
blast NP_504256 Serpentine Receptor, class X family member (srx-73) [Caenorhabditis elegans] 9.0E-89
blast AAZ91347 Serpentine receptor, class x protein 73 [Caenorhabditis elegans] 3.0E-74
blast AAA97985 Serpentine receptor, class x protein 74 [Caenorhabditis elegans] ref|NP_504255.2| Serpentine Receptor, class X family member (srx-74) [Caenorhabditis elegans] 6.0E-70
blast AAZ91347 Serpentine receptor, class x protein 73 [Caenorhabditis elegans] 2.0E-65
blast NP_504256 Serpentine Receptor, class X family member (srx-73) [Caenorhabditis elegans] 2.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.4E-31
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.3E-44
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.5E-16
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.9E-29
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.4E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504255.2 4 10-32,52-74,180-202,259-281
F41F3.6 2 108-130,186-208
GENEFINDER00000023072 7 15-37,49-71,114-136,187-204,247-269,607-629,685-707
Sequence
Target Sequence 
>C. ELEGANS:182711_AT
ttgcagtgtcaaagtctcggtggtgattatggccctttattatgtgaaaaaaatttatgg
aagtttgaagtcaagttacagtgtctacgaagcgggctgtcagcaatatttggaccttgc
aacattcaaaagacaatatgaaaacgcaagctgtgaatcaacatcgaccaataatgtaga
tgattttggatttttcattttcctattttctgtggggtatttggtgttattatatgtaat
taatcttcttactttttatcaaattttaaaattttatttgcggaagaataatcaaagaag
caacgaggattcggcgtcgatcaggaaaaacattcgcttgttttttcagacagttcttca
agattctgtatttgcaatcgatcagttatttacattcggattaaactctctcagcgatca
ccgtatttggctctttgtcagcacaatgcttgtatgggaaatggttcacttgcttgatgg
attgatcatgttactattctcaaatagactctcaacattgaaagcaataatggttagcaa
aaagttaatttcgattggtggagggaagccttcggaagctcgatccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCAGTGTCAAAGTCTCGGTGGTG 239 703 144 Antisense
CTCGGTGGTGATTATGGCCCTTTAT 364 229 159 Antisense
GTGTCTACGAAGCGGGCTGTCAGCA 226 483 224 Antisense
GCAAGCTGTGAATCAACATCGACCA 125 321 289 Antisense
GCAACGAGGATTCGGCGTCGATCAG 409 319 443 Antisense
ACATTCGCTTGTTTTTTCAGACAGT 49 105 473 Antisense
GGATTAAACTCTCTCAGCGATCACC 593 507 541 Antisense
CGATCACCGTATTTGGCTCTTTGTC 301 247 558 Antisense
GGCTCTTTGTCAGCACAATGCTTGT 73 539 572 Antisense
GGGAAATGGTTCACTTGCTTGATGG 674 493 599 Antisense
GGAAGCCTTCGGAAGCTCGATCCGG 417 529 707 Antisense
Sequence Source Affymetrix Proprietary Database