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[182710_at]

Description C35B8.3 /REP_DB=WormBase Gene ID /WP=CE27827 /TR=Q18478 /GB=AAC46555.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 80      6grp_total > 51      4grp_total > 39      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 450.6
(3)
P 		105.5
(-3)
P 		150.6
(-2.2)
P 		247.9
(-0.5)
P 		345
B 470.1
(3)
P 		97.9
(-3)
P 		141.8
(-2.3)
P 		255.3
(-0.5)
P 		372
C 413.5
(3)
P 		138.9
(-2.9)
P 		132.2
(-3)
P 		269.2
(-0.1)
P 		281
avr 444.7
(3) 		114.1
(-3) 		141.5
(-2.5) 		257.5
(-0.4) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 240.9
(0.9)
P 		188.8
(-1.1)
P 		290.8
(2.9)
P 		293.4
(3)
P 		187.7
(-1.1)
P 		140.4
(-3)
P 		153
B 210.7
(-1.6)
P 		211.6
(-1.6)
P 		365.6
(3)
P 		210.3
(-1.7)
P 		165.5
(-3)
P 		179.8
(-2.6)
P 		200
C 201
(-0.9)
P 		210.3
(-0.6)
P 		286.5
(2.5)
P 		297.8
(3)
P 		193.4
(-1.3)
P 		150.6
(-3)
P 		147
avr 217.5
(-0.7) 		203.6
(-1.2) 		314.3
(3) 		267.2
(1.2) 		182.2
(-2) 		156.9
(-3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 164.1
(3)
P 		22.9
(-3)
P 		39.4
(-2.3)
P 		36.3
(-2.4)
P 		141
B 149.9
(3)
P 		24.2
(-3)
P 		32.9
(-2.6)
P 		54.4
(-1.6)
P 		126
C 136.9
(3)
P 		39.9
(-3)
P 		46.1
(-2.6)
P 		45.4
(-2.7)
P 		97
avr 150.3
(3) 		29
(-3) 		39.5
(-2.5) 		45.4
(-2.2) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 44.4
(-1.5)
P 		67.2
(1.9)
P 		63.3
(1.3)
P 		74.4
(3)
P 		56.6
(0.3)
P 		34.2
(-3)
P 		40
B 73.3
(0.2)
P 		70.4
(-0.3)
P 		88.8
(3)
P 		55.7
(-3)
P 		67.2
(-0.9)
P 		67
(-1)
P 		33
C 74.5
(3)
P 		64.2
(0.4)
P 		72.9
(2.6)
P 		59.9
(-0.6)
P 		62.6
(0)
P 		50.4
(-3)
P 		24
avr 64.1
(0.3) 		67.3
(1.1) 		75
(3) 		63.3
(0.1) 		62.1
(-0.2) 		50.5
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182710_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16637
Sequence Type Exemplar sequence
Representative Public ID C35B8.3 NCBI
Target Description C35B8.3 /REP_DB=WormBase Gene ID /WP=CE27827 /TR=Q18478 /GB=AAC46555.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029271(11), NM_001029272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029271 NCBI Caenorhabditis elegans C35B8.3a (C35B8.3) mRNA, complete cds. 11/11 None
NM_001029272 NCBI Caenorhabditis elegans C35B8.3b (C35B8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000037959 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9214264:9216562:1 11/11 None
SNAP00000037954 ENSEMBL cdna:SNAP chromosome:CEL140:X:9214670:9216562:1 11/11 None
C35B8.3a.1 ENSEMBL cdna:known chromosome:CEL140:X:9213884:9216562:1 gene:C35B8.3 11/11 None
C35B8.3b ENSEMBL cdna:known chromosome:CEL140:X:9213913:9216787:1 gene:C35B8.3 11/11 None
C35B8.3a.2 ENSEMBL cdna:known chromosome:CEL140:X:9214260:9216562:1 gene:C35B8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9213911-9216561(+) 100.0 100.0
Public Domain and Genome References
Ensembl C35B8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024443 C35B8.3b [Caenorhabditis elegans] gb|AAR25655.1| Hypothetical protein C35B8.3b [Caenorhabditis elegans] 0.0
blast NP_001024442 C35B8.3a [Caenorhabditis elegans] gb|AAC46555.2| Hypothetical protein C35B8.3a [Caenorhabditis elegans] 0.0
blast CAE69858 Hypothetical protein CBG16187 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182710_AT
cacaaatcctattgcctcatttcaagggtctggctcagacattgactcaacttcaaactc
ttacagttagagtttggaaaaaggaagctctcctgagaagagtggaagattcggctaaga
attcaatgctggagattgtgacgtcatatgatgaacttgcaatcgggcttgacggcagac
tatacattccgtgtaatgtggatgttccatcattagtccaatttttggaagaaaactcaa
aaaaggcaattgaaatcaatcaacaaatgcatcatttaattaacgaacttgaatttgccc
gcgacgagtgcatcaaagagttgaaactgaccggcctgcggtgggagcaagctttcacac
ctgaagccttgatccaatgtgtttaccggctcactcattgctcggacgatgtaagaaacc
tggtgtccggtctttctattgtgatttcggcgagtccaagcatatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAAATCCTATTGCCTCATTTCAA 153 195 959 Antisense
GTCTGGCTCAGACATTGACTCAACT 20 473 986 Antisense
GATGAACTTGCAATCGGGCTTGACG 379 407 1108 Antisense
GGGCTTGACGGCAGACTATACATTC 339 491 1123 Antisense
TAACGAACTTGAATTTGCCCGCGAC 318 639 1239 Antisense
TTGCCCGCGACGAGTGCATCAAAGA 150 703 1253 Antisense
GCGGTGGGAGCAAGCTTTCACACCT 309 291 1296 Antisense
TTTCACACCTGAAGCCTTGATCCAA 156 671 1311 Antisense
GATCCAATGTGTTTACCGGCTCACT 591 415 1329 Antisense
GTCCGGTCTTTCTATTGTGATTTCG 253 477 1383 Antisense
GATTTCGGCGAGTCCAAGCATATAT 698 427 1401 Antisense
Sequence Source Affymetrix Proprietary Database