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[182708_s_at]

Description Y43F8C.8 /REP_DB=WormBase Gene ID /WP=CE21906 /TR=Q9XWP0 /GB=CAA21611.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_high_8_8 > 61      6grp_highest_nonorm > 82      6grp_total > 57      4grp_total > 59      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 782
1 2 3 4 range
A 660.6
(0.1)
P 		851.5
(1.7)
P 		999
(3)
P 		291.5
(-3)
M 		708
B 501.4
(-0.6)
P 		737.5
(1.7)
P 		870.7
(3)
P 		247
(-3)
P 		624
C 576.1
(0.2)
P 		885.7
(3)
P 		828.1
(2.5)
P 		217.1
(-3)
P 		669
avr 579.4
(0) 		824.9
(2.3) 		899.3
(3) 		251.9
(-3) 		647

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 441.2
(0.6)
P 		386.5
(-0.7)
P 		424.4
(0.2)
P 		358.3
(-1.3)
P 		280.8
(-3)
P 		551.2
(3)
P 		270
B 406.4
(0.7)
P 		370.9
(-0.6)
P 		338.5
(-1.7)
P 		300.4
(-3)
P 		361.5
(-0.9)
P 		473.2
(3)
P 		173
C 438.1
(1.1)
P 		440
(1.2)
P 		397.8
(-0.5)
P 		336.7
(-3)
P 		406.2
(-0.2)
P 		485.2
(3)
P 		149
avr 428.6
(0.4) 		399.1
(-0.6) 		386.9
(-1.1) 		331.8
(-3) 		349.5
(-2.4) 		503.2
(3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 240.5
(2.4)
P 		184.8
(0.9)
P 		261.2
(3)
P 		42.7
(-3)
M 		219
B 159.9
(1.3)
P 		182.1
(2.2)
P 		201.8
(3)
P 		52.6
(-3)
P 		149
C 190.7
(0.7)
P 		254.6
(2.2)
P 		288.6
(3)
P 		36.6
(-3)
P 		252
avr 197
(1.4) 		207.2
(1.7) 		250.5
(3) 		44
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 81.3
(-3)
P 		137.4
(3)
P 		92.4
(-1.8)
P 		90.9
(-2)
P 		84.7
(-2.6)
P 		134.2
(2.7)
P 		56
B 141.4
(0.8)
P 		123.5
(-0.3)
P 		82.2
(-2.8)
P 		79.6
(-3)
P 		146.9
(1.2)
P 		176.4
(3)
P 		97
C 162.4
(3)
P 		134.3
(1.2)
P 		101.2
(-0.9)
P 		67.7
(-3)
P 		131.4
(1)
P 		162.4
(3)
P 		95
avr 128.4
(0.8) 		131.7
(1) 		91.9
(-2) 		79.4
(-3) 		121
(0.2) 		157.7
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182708_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13844
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.8 NCBI
Target Description Y43F8C.8 /REP_DB=WormBase Gene ID /WP=CE21906 /TR=Q9XWP0 /GB=CAA21611.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075407 NCBI Caenorhabditis elegans Y43F8C.8 (Y43F8C.8) mRNA, complete cds. 11/11 A 
SNAP00000039611 ENSEMBL cdna:SNAP chromosome:CEL140:V:19646811:19648125:1 11/11 None
GENEFINDER00000039625 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19646811:19648125:1 11/11 None
Y43F8C.8 ENSEMBL cdna:known chromosome:CEL140:V:19646811:19648240:1 gene:Y43F8C.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19646810-19648125(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8C.8
Entrez Gene 180287 Entrez gene
SwissProt Q9XWP0 EMBL-EBI
WormBase CE21906 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21611 Hypothetical protein Y43F8C.8 [Caenorhabditis elegans] ref|NP_507808.1| Y43F8C.8 [Caenorhabditis elegans] 9.0E-76
blast CAE61742 Hypothetical protein CBG05694 [Caenorhabditis briggsae] 1.0E-55
blast EAA10773 ENSANGP00000011327 [Anopheles gambiae str. PEST] ref|XP_316680.2| ENSANGP00000011327 [Anopheles gambiae str. PEST] 4.0E-24
Sequence
Target Sequence 
>C. ELEGANS:182708_S_AT
aacgctgtttgcaaagttccggcgctgaattcggaagcctaccgcagcggagcccgtgtg
ctcattcgtctcatcgacccggagctcagcgaacgatttttgggctccaaacacgatttg
acacttcttgaggctgacgcagtgctcgtacgtcttctatcaaatgtgccacgtcagcag
cagcaacggcagaagccacgtggcgccacggaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCTGTTTGCAAAGTTCCGGCGC 246 143 277 Antisense
TGCAAAGTTCCGGCGCTGAATTCGG 64 577 286 Antisense
TGAATTCGGAAGCCTACCGCAGCGG 211 575 302 Antisense
GGAGCTCAGCGAACGATTTTTGGGC 630 519 357 Antisense
TTGGGCTCCAAACACGATTTGACAC 504 707 376 Antisense
GATTTGACACTTCTTGAGGCTGACG 482 427 391 Antisense
TCTTGAGGCTGACGCAGTGCTCGTA 549 615 402 Antisense
AGTGCTCGTACGTCTTCTATCAAAT 49 61 417 Antisense
GTCTTCTATCAAATGTGCCACGTCA 315 469 428 Antisense
GTCAGCAGCAGCAACGGCAGAAGCC 83 465 449 Antisense
GAAGCCACGTGGCGCCACGGAAGAA 161 345 468 Antisense
Sequence Source Affymetrix Proprietary Database