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[182707_at]

Description Y43F8C.8 /REP_DB=WormBase Gene ID /WP=CE21906 /TR=Q9XWP0 /GB=CAA21611.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      4grp_highest_8_8 > 10      4grp_high_8_8 > 62      6grp_highest_nonorm > 81      6grp_total > 01      4grp_total > 57      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 800
1 2 3 4 range
A 298.8
(-1.6)
P 		666.9
(3)
P 		662.9
(3)
P 		184.9
(-3)
P 		482
B 338.6
(-1.4)
P 		571.8
(0.7)
P 		841.2
(3)
P 		148.3
(-3)
P 		693
C 319
(-2)
P 		679.5
(0.9)
P 		948.7
(3)
P 		197.3
(-3)
P 		751
avr 318.8
(-1.7) 		639.4
(1.3) 		817.6
(3) 		176.8
(-3) 		641

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 229.7
(-2.8)
P 		278.1
(2.1)
P 		227.7
(-3)
P 		286.9
(3)
P 		232.5
(-2.5)
P 		254.8
(-0.3)
P 		59
B 169.4
(-3)
P 		301.1
(3)
P 		235.2
(-0)
P 		202.3
(-1.5)
P 		226.6
(-0.4)
P 		220.9
(-0.7)
P 		132
C 311.7
(3)
P 		294.4
(2.2)
P 		196.5
(-2.3)
P 		224.2
(-1)
P 		181.2
(-3)
P 		230.5
(-0.7)
P 		131
avr 236.9
(-1.2) 		291.2
(3) 		219.8
(-2.5) 		237.8
(-1.1) 		213.4
(-3) 		235.4
(-1.3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 108.8
(0.4)
P 		144.8
(1.8)
P 		173.3
(3)
P 		27.1
(-3)
P 		146
B 108
(-0.2)
P 		141.2
(1)
P 		194.9
(3)
P 		31.6
(-3)
P 		163
C 105.6
(-1.5)
P 		195.4
(0.3)
P 		330.6
(3)
P 		33.3
(-3)
P 		297
avr 107.5
(-0.7) 		160.5
(0.9) 		232.9
(3) 		30.7
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 42.4
(-3)
P 		98.9
(3)
P 		49.6
(-2.2)
P 		72.8
(0.2)
P 		70.2
(-0)
P 		62
(-0.9)
P 		57
B 58.9
(-2.3)
P 		100.2
(3)
P 		57.1
(-2.5)
P 		53.6
(-3)
P 		92.1
(2)
P 		82.4
(0.7)
P 		47
C 115.5
(3)
P 		89.8
(0.8)
P 		50
(-2.6)
P 		45.1
(-3)
P 		58.6
(-1.8)
P 		77.2
(-0.3)
P 		70
avr 72.3
(-0.3) 		96.3
(3) 		52.2
(-3) 		57.2
(-2.3) 		73.6
(-0.1) 		73.9
(-0) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182707_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13844
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.8 NCBI
Target Description Y43F8C.8 /REP_DB=WormBase Gene ID /WP=CE21906 /TR=Q9XWP0 /GB=CAA21611.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075407 NCBI Caenorhabditis elegans Y43F8C.8 (Y43F8C.8) mRNA, complete cds. 11/11 A 
SNAP00000039611 ENSEMBL cdna:SNAP chromosome:CEL140:V:19646811:19648125:1 11/11 None
GENEFINDER00000039625 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19646811:19648125:1 11/11 None
Y43F8C.8 ENSEMBL cdna:known chromosome:CEL140:V:19646811:19648240:1 gene:Y43F8C.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19646810-19648125(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8C.8
Entrez Gene 180287 Entrez gene
SwissProt Q9XWP0 EMBL-EBI
WormBase CE21906 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21611 Hypothetical protein Y43F8C.8 [Caenorhabditis elegans] ref|NP_507808.1| Y43F8C.8 [Caenorhabditis elegans] 9.0E-76
blast CAE61742 Hypothetical protein CBG05694 [Caenorhabditis briggsae] 1.0E-55
blast EAA10773 ENSANGP00000011327 [Anopheles gambiae str. PEST] ref|XP_316680.2| ENSANGP00000011327 [Anopheles gambiae str. PEST] 4.0E-24
Sequence
Target Sequence 
>C. ELEGANS:182707_AT
gctccgaagcttgctcaagtctcgacaggtgatttgcgggctccgagagctccgagctct
ctccacaagccagggaaacgagagtatcattgatttcgtcgacactgtcactgaaacctc
ggaagcgcagaaccaatcgttcgcctctctgctgcgaaactcgaaattcatgcaactcgg
cgactttaacgggcgcctcgtcgtcggaaaaatcgctcaacgcgttcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCGAAGCTTGCTCAAGTCTCGA 231 299 15 Antisense
AGTCTCGACAGGTGATTTGCGGGCT 495 59 32 Antisense
CTCTCTCCACAAGCCAGGGAAACGA 346 231 71 Antisense
CATTGATTTCGTCGACACTGTCACT 204 215 102 Antisense
CACTGTCACTGAAACCTCGGAAGCG 297 197 117 Antisense
GAAGCGCAGAACCAATCGTTCGCCT 114 345 136 Antisense
CCTCTCTGCTGCGAAACTCGAAATT 21 269 158 Antisense
GAAATTCATGCAACTCGGCGACTTT 602 363 177 Antisense
GCAACTCGGCGACTTTAACGGGCGC 4 319 186 Antisense
GGCGCCTCGTCGTCGGAAAAATCGC 27 541 206 Antisense
GAAAAATCGCTCAACGCGTTCAAGA 510 355 221 Antisense
Sequence Source Affymetrix Proprietary Database