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[182706_at]

Description C46A5.8 /REP_DB=WormBase Gene ID /WP=CE08757 /TR=Q18653 /GB=AAB03148.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 07      4grp_high_8_8 > 04      6grp_total > 36      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 386
1 2 3 4 range
A 183.5
(-1.5)
P 		96.4
(-3)
P 		101.5
(-2.9)
A 		443.6
(3)
P 		347
B 164.9
(-1.4)
P 		103.7
(-2.5)
A 		76.2
(-3)
P 		409.7
(3)
P 		334
C 203.4
(-0.9)
P 		65.9
(-3)
A 		67.1
(-3)
M 		451.8
(3)
P 		386
avr 183.9
(-1.3) 		88.7
(-2.9) 		81.6
(-3) 		435
(3) 		353

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 86.6
(-3)
P 		130.4
(-0.2)
P 		118.6
(-1)
P 		181.7
(3)
P 		95.4
(-2.4)
P 		127.7
(-0.4)
P 		95
B 198.2
(3)
P 		179
(1.8)
P 		132.7
(-1.2)
P 		104
(-3)
P 		103.6
(-3)
P 		151.4
(0)
P 		95
C 196.2
(3)
P 		123.6
(-0.7)
P 		108.5
(-1.4)
P 		77.9
(-3)
A 		108.2
(-1.5)
P 		105.9
(-1.6)
P 		118
avr 160.3
(3) 		144.3
(1.3) 		119.9
(-1.2) 		121.2
(-1.1) 		102.4
(-3) 		128.3
(-0.3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 66.8
(3)
P 		20.9
(-3)
P 		26.5
(-2.3)
A 		64.9
(2.8)
P 		46
B 52.6
(0)
P 		25.6
(-2.3)
A 		17.7
(-3)
P 		87.3
(3)
P 		70
C 67.3
(2.1)
P 		18.9
(-3)
A 		23.4
(-2.5)
M 		76.2
(3)
P 		57
avr 62.2
(1.5) 		21.8
(-3) 		22.5
(-2.9) 		76.1
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 16
(-3)
P 		46.4
(3)
P 		25.8
(-1.1)
P 		46.1
(2.9)
P 		28.8
(-0.5)
P 		31.1
(-0)
P 		30
B 69
(3)
P 		59.6
(1.6)
P 		32.2
(-2.3)
P 		27.6
(-3)
P 		42.1
(-0.9)
P 		56.5
(1.2)
P 		41
C 72.7
(3)
P 		37.7
(-0.7)
P 		27.6
(-1.7)
P 		15.7
(-3)
A 		35
(-1)
P 		35.5
(-0.9)
P 		57
avr 52.6
(3) 		47.9
(1.8) 		28.5
(-3) 		29.8
(-2.7) 		35.3
(-1.3) 		41
(0.1) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182706_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9238
Sequence Type Exemplar sequence
Representative Public ID C46A5.8 NCBI
Target Description C46A5.8 /REP_DB=WormBase Gene ID /WP=CE08757 /TR=Q18653 /GB=AAB03148.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068877(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068877 NCBI Caenorhabditis elegans C46A5.8 (C46A5.8) mRNA, complete cds. 11/11 None
SNAP00000025534 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7768378:7770008:-1 10/11 None
GENEFINDER00000025538 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7768378:7770008:-1 11/11 None
C46A5.8 ENSEMBL cdna:known chromosome:CEL140:IV:7768378:7770008:-1 gene:C46A5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7768383-7770014(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46A5.8
Entrez Gene 183501 Entrez gene
SwissProt Q18653 EMBL-EBI
WormBase CE08757 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03148 Hypothetical protein C46A5.8 [Caenorhabditis elegans] ref|NP_501278.1| C46A5.8 [Caenorhabditis elegans] 1.0E-98
blast CAE70877 Hypothetical protein CBG17667 [Caenorhabditis briggsae] 3.0E-78
blast AAB03148 Hypothetical protein C46A5.8 [Caenorhabditis elegans] ref|NP_501278.1| C46A5.8 [Caenorhabditis elegans] 3.0E-75
blast CAE70877 Hypothetical protein CBG17667 [Caenorhabditis briggsae] 9.0E-56
Sequence
Target Sequence 
>C. ELEGANS:182706_AT
atgttccgctggttgttccaaagtgagggtgtcactagaagtttcgatacaccatcagaa
actcaaagtgcacgtgatgacagaaaaacaatcggagattatgctgataattttcttctt
tttgatctcgttatgggtgaagttgaaatggctgttattcggtttgaaattgaaaaagaa
gaaaaagaagaagccgagagaaaagcagaaagacgccccgattattcatggctcatatct
ggaaatatgaatcgagcaaggaaacaactttcgattaatgagaagaacagaattgaaaac
gcatgtgaacgtctaaaaccatgtgagtggtcaaaaacaattgacacgtggaaaataaaa
acacagaatccaagtactcgtgatcaaatcattgagaattttgtgatagccactcacgag
acaattcaatccagaaaacatgagccaacaatcactgaagttttgaaaaattttgcgacg
ggaagatctggaagtttgcatacggtgagccatggagaattgccacgtgtcggatcggga
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCCGCTGGTTGTTCCAAAGTG 15 47 13 Antisense
GGGTGTCACTAGAAGTTTCGATACA 368 497 39 Antisense
ATTTTCTTCTTTTTGATCTCGTTAT 208 15 122 Antisense
GAAATGGCTGTTATTCGGTTTGAAA 639 359 157 Antisense
GACGCCCCGATTATTCATGGCTCAT 175 381 224 Antisense
GAATCCAAGTACTCGTGATCAAATC 404 329 378 Antisense
GCCACTCACGAGACAATTCAATCCA 352 279 421 Antisense
GCGACGGGAAGATCTGGAAGTTTGC 704 285 487 Antisense
GGAAGTTTGCATACGGTGAGCCATG 69 533 502 Antisense
GAGCCATGGAGAATTGCCACGTGTC 271 383 519 Antisense
GAATTGCCACGTGTCGGATCGGGAA 66 325 529 Antisense
Sequence Source Affymetrix Proprietary Database