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[182705_at]

Description F55F1.2 /REP_DB=WormBase Gene ID /WP=CE07278 /TR=Q20842 /GB=AAB00618.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 09      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 13.2
(-3)
A 		38.2
(-0.4)
A 		19.4
(-2.4)
A 		71.5
(3)
P 		58
B 24.4
(-3)
A 		40.2
(0.3)
A 		35.5
(-0.7)
A 		53.3
(3)
A 		29
C 18.6
(-2.7)
A 		12.6
(-3)
A 		43.1
(-1.2)
A 		115.6
(3)
A 		103
avr 18.7
(-3) 		30.3
(-1.9) 		32.7
(-1.6) 		80.1
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 21.5
(-1.6)
A 		41.7
(0.6)
A 		30.1
(-0.7)
A 		8.2
(-3)
A 		64.7
(3)
P 		44.1
(0.8)
A 		57
B 43.6
(1.6)
A 		15.7
(-1.5)
A 		56.1
(3)
A 		1.9
(-3)
A 		28.3
(-0.1)
A 		23.5
(-0.6)
A 		54
C 3.9
(-3)
A 		30.4
(3)
A 		16.3
(-0.2)
A 		13
(-0.9)
A 		14.3
(-0.6)
A 		28.4
(2.5)
A 		27
avr 23
(0.3) 		29.3
(1.6) 		34.2
(2.7) 		7.7
(-3) 		35.8
(3) 		32
(2.2) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.8
(-3)
A 		8.3
(0.7)
A 		5.1
(-2.7)
A 		10.5
(3)
P 		6
B 7.8
(-3)
A 		9.9
(0.5)
A 		8.2
(-2.3)
A 		11.4
(3)
A 		4
C 6.1
(-2.1)
A 		3.6
(-3)
A 		15
(1.3)
A 		19.5
(3)
A 		16
avr 6.2
(-3) 		7.3
(-2.1) 		9.4
(-0.5) 		13.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4
(-2.3)
A 		14.8
(1.4)
A 		6.6
(-1.4)
A 		2.1
(-3)
A 		19.5
(3)
P 		10.7
(-0)
A 		17
B 15.2
(3)
A 		5.2
(-1.1)
A 		13.6
(2.3)
A 		0.5
(-3)
A 		11.5
(1.5)
A 		8.8
(0.4)
A 		15
C 1.4
(-3)
A 		9.3
(2.9)
A 		4.2
(-0.9)
A 		2.6
(-2.1)
A 		4.6
(-0.6)
A 		9.5
(3)
A 		8
avr 6.9
(0.1) 		9.8
(1.8) 		8.1
(0.8) 		1.7
(-3) 		11.9
(3) 		9.7
(1.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18520
Sequence Type Exemplar sequence
Representative Public ID F55F1.2 NCBI
Target Description F55F1.2 /REP_DB=WormBase Gene ID /WP=CE07278 /TR=Q20842 /GB=AAB00618.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076082(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076082 NCBI Caenorhabditis elegans F55F1.2 (F55F1.2) mRNA, complete cds. 11/11 None
F55F1.2 ENSEMBL cdna:known chromosome:CEL140:X:2769582:2770054:-1 gene:F55F1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2769581-2770054(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55F1.2
Entrez Gene 186317 Entrez gene
SwissProt Q20842 EMBL-EBI
WormBase CE07278 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00618 Hypothetical protein F55F1.2 [Caenorhabditis elegans] ref|NP_508483.1| F55F1.2 [Caenorhabditis elegans] 1.0E-76
Sequence
Target Sequence 
>C. ELEGANS:182705_AT
ctcccccctcattcagtgaagaaaccgggccgaatgctccaagaagggggtgcccaaaag
agcaacattacggacacactactcttttttcgagtcaccgaaagaaaagggagaaatggc
ttgaaaacgaaagaggaaattcaaacgaaaacattgggaggaattggaatccgatgccta
tatttcgcaatttcggcttgcaaacttgtggtggcatcagttctgttttcagaattaatt
tgccttcctttttttatagccagaggaccaccagaatctcgtgacaaagccacagccaat
gtgacttggttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCCCCTCATTCAGTGAAGAAAC 631 233 19 Antisense
GAATGCTCCAAGAAGGGGGTGCCCA 223 331 50 Antisense
GCAACATTACGGACACACTACTCTT 665 319 80 Antisense
CACTACTCTTTTTTCGAGTCACCGA 241 167 95 Antisense
GGAATCCGATGCCTATATTTCGCAA 227 533 184 Antisense
TTTCGGCTTGCAAACTTGTGGTGGC 528 667 209 Antisense
GTGGTGGCATCAGTTCTGTTTTCAG 228 489 226 Antisense
TTTGCCTTCCTTTTTTTATAGCCAG 317 669 257 Antisense
GCCAGAGGACCACCAGAATCTCGTG 148 281 277 Antisense
GAATCTCGTGACAAAGCCACAGCCA 274 329 292 Antisense
GCCACAGCCAATGTGACTTGGTTAC 91 279 307 Antisense
Sequence Source Affymetrix Proprietary Database