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[182704_at]

Description F37C4.4 /REP_DB=WormBase Gene ID /WP=CE17047 /TR=O44399 /GB=AAB95170.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 61      6grp_total > 30      4grp_total > 49      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 510
1 2 3 4 range
A 251.4
(-3)
P 		715.3
(3)
P 		549.5
(0.9)
P 		330.9
(-2)
P 		464
B 205.4
(-3)
P 		401.5
(1.6)
P 		461.5
(3)
P 		286
(-1.1)
P 		256
C 209.1
(-3)
P 		424.3
(2.2)
P 		458.4
(3)
P 		309.9
(-0.6)
P 		249
avr 222
(-3) 		513.7
(3) 		489.8
(2.5) 		308.9
(-1.2) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 388.9
(-0)
P 		527.8
(3)
P 		302.2
(-1.9)
P 		448.3
(1.3)
P 		425.8
(0.8)
P 		252.9
(-3)
P 		275
B 311.4
(-1.4)
P 		525.6
(3)
P 		449.9
(1.4)
P 		377.8
(-0)
P 		425.4
(0.9)
P 		234.1
(-3)
P 		292
C 347.7
(-0.4)
P 		427.8
(1.9)
P 		419.1
(1.6)
P 		468.5
(3)
P 		313.6
(-1.3)
P 		253.4
(-3)
P 		215
avr 349.3
(-0.5) 		493.7
(3) 		390.4
(0.5) 		431.5
(1.5) 		388.3
(0.4) 		246.8
(-3) 		247
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 91.5
(-0.6)
P 		155.3
(3)
P 		143.6
(2.3)
P 		48.4
(-3)
P 		107
B 65.5
(-2.4)
P 		99.2
(2)
P 		106.9
(3)
P 		61
(-3)
P 		46
C 69.2
(-2.1)
P 		122
(0.9)
P 		159.8
(3)
P 		52.2
(-3)
P 		108
avr 75.4
(-1.4) 		125.5
(2.2) 		136.8
(3) 		53.9
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 71.7
(-2.5)
P 		187.7
(3)
P 		65.8
(-2.8)
P 		113.7
(-0.5)
P 		128.5
(0.2)
P 		61.6
(-3)
P 		126
B 108.4
(-1.6)
P 		175
(3)
P 		109.2
(-1.5)
P 		100.1
(-2.1)
P 		172.9
(2.9)
P 		87.3
(-3)
P 		88
C 128.9
(2.8)
P 		130.5
(3)
P 		106.7
(-0.1)
P 		94.2
(-1.8)
P 		101.5
(-0.8)
P 		84.8
(-3)
P 		46
avr 103
(-1.3) 		164.4
(3) 		93.9
(-1.9) 		102.7
(-1.3) 		134.3
(0.9) 		77.9
(-3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182704_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10434
Sequence Type Exemplar sequence
Representative Public ID F37C4.4 NCBI
Target Description F37C4.4 /REP_DB=WormBase Gene ID /WP=CE17047 /TR=O44399 /GB=AAB95170.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171310(11), NM_171309(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171310 NCBI Caenorhabditis elegans F37C4.4b (F37C4.4) mRNA, complete cds. 11/11 None
NM_171309 NCBI Caenorhabditis elegans F37C4.4a (F37C4.4) mRNA, complete cds. 11/11 None
SNAP00000038133 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3869557:3871720:1 11/11 None
GENEFINDER00000038142 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3869557:3871720:1 11/11 None
F37C4.4b.2 ENSEMBL cdna:known chromosome:CEL140:IV:3867227:3871720:1 gene:F37C4.4 11/11 None
F37C4.4a ENSEMBL cdna:known chromosome:CEL140:IV:3867303:3871819:1 gene:F37C4.4 11/11 None
F37C4.4b.1 ENSEMBL cdna:known chromosome:CEL140:IV:3869544:3871720:1 gene:F37C4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3869549-3871726(+) 96.93 96.93
Public Domain and Genome References
Ensembl F37C4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95170 Hypothetical protein F37C4.4a [Caenorhabditis elegans] ref|NP_741363.1| F37C4.4a [Caenorhabditis elegans] 1.0E-124
blast AAB95170 Hypothetical protein F37C4.4a [Caenorhabditis elegans] ref|NP_741363.1| F37C4.4a [Caenorhabditis elegans] 1.0E-117
blast AAM98021 Hypothetical protein F37C4.4b [Caenorhabditis elegans] ref|NP_741364.1| F37C4.4b [Caenorhabditis elegans] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741364.1 2 122-144,164-186
NP_741363.1 2 134-156,176-198
F37C4.4b.2 2 122-144,164-186
F37C4.4a 2 134-156,176-198
F37C4.4b.1 2 122-144,164-186
SNAP00000038133 2 122-144,164-186
GENEFINDER00000038142 2 122-144,164-186
Sequence
Target Sequence 
>C. ELEGANS:182704_AT
gatttcagcataccgaatacgcccaaataatggtgcacctgtgccgcgcggagatcctca
tctcgctcatctttttggctcatggcaccacatgccccggctacccgacagaagccgaat
accaatccacgtgccatatgaatacggtatcagcaattgtcagcttgctcaccggagcca
tgggattgggcgctgtgcatagatatcggtggaggaccatgctaatcttgtggctcgttt
tttgtatcatgtcggctgtcggaagtctgctagctgtgattactacaggcatctggctcg
accactactcaaaaatgaaagtccgcacggcaatcggcaacgggttatccggtttcatgc
ttttggcatcagttgctcttggagtgtgcttcatcttgaccgctgtcatgatttgtcatt
attggaactccaacaccaccggctatcagccagtgcagaaaattgcaaaacgcgctagat
ctctgcgccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCAGCATACCGAATACGCCCA 274 429 185 Antisense
ATCTTTTTGGCTCATGGCACCACAT 429 31 253 Antisense
ATACCAATCCACGTGCCATATGAAT 413 23 303 Antisense
GGAGCCATGGGATTGGGCGCTGTGC 213 521 358 Antisense
GGACCATGCTAATCTTGTGGCTCGT 67 523 398 Antisense
CATGTCGGCTGTCGGAAGTCTGCTA 262 209 432 Antisense
GATTACTACAGGCATCTGGCTCGAC 551 429 462 Antisense
CACGGCAATCGGCAACGGGTTATCC 478 187 510 Antisense
GTTATCCGGTTTCATGCTTTTGGCA 230 445 528 Antisense
TCTTGGAGTGTGCTTCATCTTGACC 461 617 561 Antisense
AAAACGCGCTAGATCTCTGCGCCGT 207 131 651 Antisense
Sequence Source Affymetrix Proprietary Database