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[182701_at]

Description F10A3.13 /REP_DB=WormBase Gene ID /WP=CE15778 /TR=O45344 /GB=CAB07349.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 42      6grp_cgc > 51      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 13.4
(-3)
A 		63.4
(3)
A 		46.2
(0.9)
A 		63.4
(3)
A 		50
B 34.3
(-3)
A 		77.3
(3)
A 		58.9
(0.4)
A 		40.9
(-2.1)
A 		43
C 18.5
(3)
A 		14.4
(-0.6)
A 		17.3
(2)
A 		11.6
(-3)
A 		7
avr 22.1
(-3) 		51.7
(3) 		40.8
(0.8) 		38.6
(0.3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 74.8
(3)
A 		46.4
(0.1)
A 		42.3
(-0.3)
A 		27.4
(-1.8)
A 		15.2
(-3)
A 		27.8
(-1.7)
A 		60
B 41.3
(0.2)
A 		32.5
(-0.6)
A 		72.7
(2.9)
A 		73.7
(3)
A 		57.6
(1.6)
A 		4.8
(-3)
A 		69
C 15.8
(-2.1)
A 		60.6
(3)
A 		9.6
(-2.8)
A 		11.3
(-2.6)
A 		39.6
(0.6)
A 		8.1
(-3)
A 		53
avr 44
(2.5) 		46.5
(3) 		41.5
(2.1) 		37.5
(1.4) 		37.5
(1.4) 		13.6
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.9
(-3)
A 		13.8
(3)
A 		12.1
(1.9)
A 		9.3
(-0)
A 		9
B 10.9
(-1.7)
A 		19.1
(3)
A 		13.6
(-0.2)
A 		8.7
(-3)
A 		10
C 6.1
(3)
A 		4.2
(0.2)
A 		6
(2.9)
A 		2
(-3)
A 		4
avr 7.3
(-2.4) 		12.4
(3) 		10.6
(1.1) 		6.7
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 13.8
(1.6)
A 		16.5
(3)
A 		9.2
(-0.7)
A 		6.9
(-1.8)
A 		4.6
(-3)
A 		6.8
(-1.9)
A 		12
B 14.4
(0.5)
A 		10.8
(-0.5)
A 		17.7
(1.4)
A 		19.5
(1.9)
A 		23.4
(3)
A 		1.8
(-3)
A 		22
C 5.8
(-1.7)
A 		18.5
(3)
A 		2.5
(-2.9)
A 		2.3
(-3)
A 		12.8
(0.9)
A 		2.7
(-2.9)
A 		16
avr 11.3
(0.9) 		15.3
(3) 		9.8
(0.1) 		9.6
(0) 		13.6
(2.1) 		3.8
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182701_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12729
Sequence Type Exemplar sequence
Representative Public ID F10A3.13 NCBI
Target Description F10A3.13 /REP_DB=WormBase Gene ID /WP=CE15778 /TR=O45344 /GB=CAB07349.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074673(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074673 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-108) (str-108) mRNA, complete cds. 11/11 None
GENEFINDER00000000113 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16168819:16169992:1 11/11 None
F10A3.13 ENSEMBL cdna:known chromosome:CEL140:V:16168819:16169992:1 gene:F10A3.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16168818-16169992(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-108
Ensembl F10A3.13
Entrez Gene 184282 Entrez gene
SwissProt O45344 EMBL-EBI
WormBase CE15778 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07349 Hypothetical protein F10A3.13 [Caenorhabditis elegans] ref|NP_507074.1| Seven TM Receptor family member (str-108) [Caenorhabditis elegans] 0.0
blast CAB07348 Hypothetical protein F10A3.12 [Caenorhabditis elegans] ref|NP_507073.1| F10A3.12 [Caenorhabditis elegans] 1.0E-134
blast CAB07350 Hypothetical protein F10A3.15 [Caenorhabditis elegans] ref|NP_507075.2| Seven TM Receptor family member (str-111) [Caenorhabditis elegans] 1.0E-127
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507074.1 7 10-32,45-64,101-120,133-155,205-227,255-277,287-309
F10A3.13 7 10-32,45-64,101-120,133-155,205-227,255-277,287-309
GENEFINDER00000000113 7 10-32,45-64,101-120,133-155,205-227,255-277,287-309
Sequence
Target Sequence 
>C. ELEGANS:182701_AT
ttttggatgtttactgtcttcacccaaatgagtacacctacacaggacctcactattatt
acacagacaattcaactggaaaatggaaatttcataatccctccttcgttgctgaaggct
acacgggcggtaatgtagctttaaccataatttccgtagcatactttggctatcaaacct
accaacatctttataagcttggaacaatgacaagtgtgaactatcgggaggttcattatc
agctattcaagacattactaattcaaacaatatttccaagtttacttgtgttcttcccgg
ctgcctgtttaatattattccctgcttttggagtcggaatcggagaaaatgcaaatttat
tgatgatatcattttcaatgtacccatgtttcgaaccgcttgttgcagtgtgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGGATGTTTACTGTCTTCACCC 507 677 521 Antisense
GTCTTCACCCAAATGAGTACACCTA 588 467 536 Antisense
ACAGGACCTCACTATTATTACACAG 396 105 562 Antisense
TGGAAATTTCATAATCCCTCCTTCG 692 547 604 Antisense
ATCCCTCCTTCGTTGCTGAAGGCTA 187 39 617 Antisense
GCTGAAGGCTACACGGGCGGTAATG 94 289 631 Antisense
TAACCATAATTTCCGTAGCATACTT 157 637 662 Antisense
GGGAGGTTCATTATCAGCTATTCAA 355 495 746 Antisense
TTCTTCCCGGCTGCCTGTTTAATAT 593 689 811 Antisense
ATTATTCCCTGCTTTTGGAGTCGGA 563 13 834 Antisense
TCGAACCGCTTGTTGCAGTGTGTTG 335 601 911 Antisense
Sequence Source Affymetrix Proprietary Database