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[182700_at]

Description C49G7.1 /REP_DB=WormBase Gene ID /WP=CE08859 /TR=O16229 /GB=AAK18896.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 9
(-3)
A 		37.9
(3)
A 		11.6
(-2.5)
A 		16.3
(-1.5)
A 		29
B 26.8
(3)
A 		8.5
(-2.3)
A 		6.2
(-3)
A 		6.9
(-2.8)
A 		21
C 11
(-3)
A 		12.8
(-2.8)
A 		31.4
(-0.3)
A 		56
(3)
A 		45
avr 15.6
(-3) 		19.7
(-0.7) 		16.4
(-2.6) 		26.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 13.1
(-3)
A 		30.8
(-1.5)
A 		23.1
(-2.2)
A 		48.3
(-0)
A 		34.5
(-1.2)
A 		84.1
(3)
A 		71
B 10.5
(-2.4)
A 		7.9
(-2.7)
A 		38.4
(1.1)
A 		5.6
(-3)
A 		21.2
(-1.1)
A 		53.8
(3)
A 		48
C 4
(-3)
A 		30.7
(-0.5)
A 		14.9
(-2)
A 		14.7
(-2)
A 		22.4
(-1.3)
A 		68.5
(3)
A 		65
avr 9.2
(-3) 		23.1
(-1.6) 		25.5
(-1.4) 		22.9
(-1.6) 		26
(-1.3) 		68.8
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.3
(-2.1)
A 		8.2
(3)
A 		3
(-2.4)
A 		2.4
(-3)
A 		6
B 8.5
(3)
A 		2.1
(-2.4)
A 		1.4
(-3)
A 		1.5
(-2.9)
A 		7
C 3.6
(-3)
A 		3.7
(-2.9)
A 		10.9
(3)
A 		9.4
(1.8)
A 		7
avr 5.1
(3) 		4.7
(-0.4) 		5.1
(3) 		4.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.4
(-3)
A 		11
(-0.1)
A 		5
(-2.1)
A 		12.2
(0.2)
A 		10.4
(-0.3)
A 		20.5
(3)
A 		18
B 3.7
(-2.3)
A 		2.6
(-2.6)
A 		9.3
(-0.5)
A 		1.5
(-3)
A 		8.6
(-0.7)
A 		20.1
(3)
A 		19
C 1.5
(-3)
A 		9.4
(-0.8)
A 		3.8
(-2.4)
A 		3
(-2.6)
A 		7.2
(-1.4)
A 		22.9
(3)
A 		21
avr 2.5
(-3) 		7.7
(-1.3) 		6
(-1.9) 		5.6
(-2) 		8.7
(-1) 		21.2
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182700_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15375
Sequence Type Exemplar sequence
Representative Public ID C49G7.1 NCBI
Target Description C49G7.1 /REP_DB=WormBase Gene ID /WP=CE08859 /TR=O16229 /GB=AAK18896.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071732(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071732 NCBI Caenorhabditis elegans C49G7.1 (C49G7.1) mRNA, complete cds. 11/11 None
SNAP00000008211 ENSEMBL cdna:SNAP chromosome:CEL140:V:4055978:4058378:-1 11/11 None
C49G7.1 ENSEMBL cdna:known chromosome:CEL140:V:4055978:4058879:-1 gene:C49G7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4055977-4058879(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49G7.1
Entrez Gene 183618 Entrez gene
SwissProt O16229 EMBL-EBI
WormBase CE08859 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18896 Hypothetical protein C49G7.1 [Caenorhabditis elegans] ref|NP_504133.1| C49G7.1 [Caenorhabditis elegans] 0.0
blast CAB04180 Hypothetical protein F26D2.10 [Caenorhabditis elegans] ref|NP_507152.1| F26D2.10 [Caenorhabditis elegans] 1.0E-159
blast AAF39929 Hypothetical protein K09D9.11 [Caenorhabditis elegans] ref|NP_504115.1| K09D9.11 [Caenorhabditis elegans] 1.0E-156
blast AAF39929 Hypothetical protein K09D9.11 [Caenorhabditis elegans] ref|NP_504115.1| K09D9.11 [Caenorhabditis elegans] 1.0E-149
blast CAE61105 Hypothetical protein CBG04861 [Caenorhabditis briggsae] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR001357 EMBL-EBI BRCT 3.5E-13
Pfam IPR002110 EMBL-EBI Ankyrin 3.6E-8
Pfam IPR001357 EMBL-EBI BRCT 3.5E-13
Pfam IPR002110 EMBL-EBI Ankyrin 3.6E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504133.1 1 212-234
C49G7.1 1 212-234
SNAP00000008211 1 97-119
Sequence
Target Sequence 
>C. ELEGANS:182700_AT
atgaagcaatgctcaccacgactcatgttgttgtaaaagtaaatcccgctggagttctgg
aaaccgatgatctgtcccttctcgtctggattttcaacggagcaattattgtcaaagaga
agtggatgactgattgcttgtcggatgagaagctcattgctcatgattcgaagtacctgg
ttaagaaagttcagtacaaaggaaccacgtacgacacgattcttgcatggagtcaggcaa
tggccaaaggacaaattccttacatgctgggagtctgtgttgttgtttgtatggaaaagt
gcaagagcttgtacacaatctcgcaacttgtcacttctcaaggtggattaatgtgcaatt
cgttcccaaaaaaggaggacttcgatgtcgaagcacgcccatatcttcatgcacatctcg
ggccactatttgtgattcacgatggaaagatgaacttggagccctatcgaaatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAAGCAATGCTCACCACGACTCA 661 43 1253 Antisense
CTCACCACGACTCATGTTGTTGTAA 339 229 1264 Antisense
AATCCCGCTGGAGTTCTGGAAACCG 309 165 1294 Antisense
TCTGGAAACCGATGATCTGTCCCTT 254 607 1308 Antisense
TCCCTTCTCGTCTGGATTTTCAACG 172 599 1327 Antisense
GAACCACGTACGACACGATTCTTGC 581 345 1454 Antisense
GGAGTCTGTGTTGTTGTTTGTATGG 697 515 1522 Antisense
CACAATCTCGCAACTTGTCACTTCT 181 195 1566 Antisense
GATTAATGTGCAATTCGTTCCCAAA 346 431 1598 Antisense
TGCACATCTCGGGCCACTATTTGTG 637 577 1662 Antisense
GAACTTGGAGCCCTATCGAAATGAC 688 349 1704 Antisense
Sequence Source Affymetrix Proprietary Database